Salvia splendens (scarlet sage): 121755296
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Entry
121755296 CDS
T07627
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03013
Nucleocytoplasmic transport
sspl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121755296
03015 mRNA surveillance pathway
121755296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121755296
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121755296
mRNA cycle factors
P-body specific factors
121755296
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Zn-C2H2_12
Motif
Other DBs
NCBI-GeneID:
121755296
NCBI-ProteinID:
XP_042006535
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Position
11:29300866..29308996
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AA seq
523 aa
AA seq
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MKGPLDRTKVVLRHLPPTISQSNLVDHIDSHFSGRYHWLSFRPGKSSPKHLKYARAYIDF
NKPDDVIEFAEVFKGHVFVNEKGTQFRTIVEYAPSQRVPKQWSKKDGREGTILKDPEYLE
FLEFLAKPVENLPSAEIQLERKEAERAGAPKDGHIVTPLMDFVRQKRAAKGGPRRTVLNG
KSSRRVGGMPSRNQVSGSSKRGSEKRTSTTMYVLRDSSKILGNKDKSTYSLARKQDVQQL
NDKPINSGSITGNESLEGENGGTGSTGSLKKKILLLKGKEKEIPNVSGGSLMRQNTASPD
KAAALKHNQQREASGKIIRSILLSRDTRQNQTSLGPQSELPIQSSNQESAKKPPRPPSLQ
SLQKDTNGAPEDKLGSNDLHVVPTEKQERRGRNKDRPDRGVWTPLRRADGLHSSDESLSL
SASQTSETGDPAEGTHVESKQDMLVTRGGEFRPLGGGRGRHFSSDNGITVGPYTHGIRRG
SAYDVKEADGSSVVEGKSPKRGGSSGYGSNEKQVWVQKSRSAT
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgaagggtccgctggatcgaacgaaggtggtgctgcggcacttgccgcccacgatttct
cagtcaaacctcgtcgaccatattgattctcacttctccggccgctaccattggctttct
tttcgccccggaaaatctagcccaaagcatctaaaatatgccagagcttacattgacttt
aacaagccagatgatgtgattgagtttgctgaggtttttaaggggcatgtctttgtcaat
gagaaaggaacacagtttagaacaattgttgaatatgccccttcacaacgtgttccgaaa
cagtggtccaagaaggatggccgtgaagggactatattgaaagatcctgaatacttggag
ttccttgaatttcttgcaaagcctgttgagaatcttcccagtgcagagatacagctggag
aggaaggaagcagaacgagctggtgctccaaaggatggtcatatagtcaccccgttaatg
gactttgttcgtcagaaaagagcagcaaagggtggacctcggaggaccgtgttgaatggg
aagtcatctagaagagttggcggaatgccatctagaaatcaagtctctggttcttcaaaa
cgaggttcagagaagaggacatctactaccatgtatgtattaagggacagttccaagatt
ctgggaaacaaagataaatcaacttattcattggctcgcaaacaggatgttcaacaactg
aatgataagcctatcaattcaggatctataaccggaaatgaatcattagaaggggaaaat
ggaggtacaggatccactggttctttgaagaagaaaatcctacttctaaaaggaaaagaa
aaggaaattcctaatgtttctggcggttctttaatgcgacagaacacagcctctcctgac
aaagctgctgccctgaaacataatcagcagcgtgaagctagtggaaagataatcaggagc
attcttcttagcagggatactcgtcaaaatcaaacatctttgggaccacaatcagaactg
cctatccagtcttctaatcaagaaagtgctaagaaacctcctcgacccccgagtctgcaa
tcacttcagaaggatacgaatggggctcctgaggacaagttaggctccaatgatttgcat
gttgtacccaccgagaagcaggagagacggggaaggaacaaggatagacctgatcgtggt
gtttggactccacttcgacgtgcggatggattacattcaagtgatgaatcattatccttg
tctgcttcgcaaacatctgaaacaggggatcctgcagaaggaactcatgtagaatcaaaa
caagatatgctggtcacacgtggtggtgaattcagacccctaggaggtggccgtggtagg
catttctcatctgacaatggaattactgtagggccttatacgcatgggattcgacgtggg
tcagcttatgacgtgaaggaagcagatggctcttccgttgtagaggggaaatccccaaaa
aggggaggttcttctggctatggttctaatgagaaacaagtgtgggtccaaaagtccagg
tcagctacatag
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