Salvia splendens (scarlet sage): 121755578
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Entry
121755578 CDS
T07627
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121755578
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspl03021
]
121755578
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121755578
Transcription machinery [BR:
sspl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121755578
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
121755578
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
121755578
NCBI-ProteinID:
XP_042006831
LinkDB
All DBs
Position
11:34720288..34726546
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AA seq
963 aa
AA seq
DB search
MDRSSRFQNPVPLSSGGFSKPPQIQNDGAGMKPLPPLLLDRFRAMVKEREDELRVFGGAA
GLALGTDEIVRIYEIVLSELTINSKPIITDLTIIAGEQRVHGEGIAGAICSRIIEASVEH
KLPSLYLLDSIVKNIGKEYIRFFSARLPEVFCEAYTQVHPNMHQAMRHLFGTWSTVFPLS
VLQKIETHLPFSPPVNGQSSGLSSSRASESPRPTHGIHINPKYLEAQNQFGQSSVDPFGT
EGVSSTGRAGLTTSGLDAVKKSIPSASRITKSSPPYGLGPGGSLSPAGPSLEEFGMDSST
KRLAVRQSPSRPGTDYGPSKVMNREEEPSEWRKRTLQGNLKPQHKAAAATAASVYKYSGG
IDLRGPRALISAYGMDEREKNNKHHKSDELDSNGAEQKIGIRTWQNTEEEEFDWEDMTPS
LADRKQSSDTYSSLPPLGNLTGRQSIVANHAPRLSTRGSVNNVAGVLPNVAGASDLTSHI
PPNFGRESLILPPQQSQNQFNAKGGGSLAESRGFLTGGEQRSQVGNFSNIDWKSGGPAGV
VSTFSSTYDSLAPEIQSGDVALRKTWNPANFQNSQVLPSHTSLPQQMQFRGQFGMKNGSS
IADQVQSEPGSSRSMPQLNLPQISSIRPGMVPMNLHGAAPPNFSVVRESRQNIHLPYSVP
SSSNTMVSPLNYGNLAHGQGPAATTPHNLVPGMQSSLPILNGPNMSFQVPMATLQPPPRG
SHPGTTQAYPIGQNNGQVAPNASVGNGLSGLISSLMVQGLISLPKQDSVGVEFDQDSLKV
RHESAITALYADLPRQCRTCGHRFKDQEEHSKHMDWHVNKNRTLKNRKTKPSPKWFVSVN
MWLSGTEALGTETAPGFLPVENTVEKEEDEEMSVPADDSQKACALCGEPFDDYYSDEMEE
WMYRGAVYMHAPGGLTVGMDTSQLGPIVHAKCRSDSHGVSSEDYKKDEMESTEEGSKRKK
PRC
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atggaccggagttcgagattccagaaccccgtgcctctgagcagcgggggtttcagcaag
cctccgcaaatccagaacgacggcgcagggatgaagccgcttccgccgttacttctcgat
agatttagggccatggtgaaggagcgggaggatgaacttagggtttttggtggtgctgct
ggtttggcgctgggaactgacgaaattgttcggatttatgagattgttttgtcggagctc
actatcaattcgaagcctatcatcactgatctcactataattgctggagagcagcgggtg
cacggcgagggcattgctggtgccatttgttcccggattattgaggcttctgtcgaacat
aaactgccttctttgtaccttttggatagcattgtgaagaacataggcaaggaatacatt
agattcttttctgctcgcttgcctgaggttttctgtgaggcttacacacaagtccacccc
aatatgcaccaagcaatgcgccatctttttggtacatggtcaacagtattcccactgtca
gtgcttcaaaagattgagacacatttgccgttttctcctcctgtgaatggccagtcttct
ggattgagctcttcaagagcttctgaatctcctcgacctacacatgggatacacataaac
ccaaagtatttggaagcacaaaatcagtttggacaatcatcagtagatccctttggaact
gaaggagtgagctcaactggtcgtgcaggccttacaacttctggtttagatgctgtgaaa
aagtctattccatcagcttctaggataacaaagtcctcccctccttatggacttgggcct
gggggatcattgtcacctgctggtccttcacttgaggagtttggcatggatagttccaca
aagagactcgctgttaggcagtcaccatctcgtcctggaactgattatgggccaagcaaa
gtgatgaacagagaagaggagccgagtgagtggcggaaaagaactttgcagggaaatctc
aaaccacagcataaagcagcagcagcaacagcagcttcagtgtacaaatatagtggtggt
attgatcttagaggaccgagagctttgattagtgcctatgggatggatgaacgtgaaaaa
aacaataaacatcataaatcagatgagttggattcaaatggtgctgagcaaaagataggt
atcaggacatggcaaaacactgaagaggaagaatttgattgggaagacatgaccccatct
ttagcagatcggaagcagtctagtgatacttattcatctcttccacctctaggtaacttg
actggaagacagagcattgttgcaaaccatgctccacgtttgtctactcgtgggtctgta
aacaatgttgctggagttctgccaaatgttgctggcgccagtgatttgacaagccatatt
cctcctaattttggccgagaatctctgattttgccgccacagcagtctcagaaccaattt
aatgccaaaggaggcggttctctagctgaaagtagaggctttttaactggtggggagcaa
aggagccaagttggaaatttctcaaatattgattggaagtctggtgggcctgctggtgtt
gtttccacatttagttccacctacgactcactagctcctgaaattcaatcaggtgatgtt
gctttaagaaaaacatggaatcctgcaaattttcaaaactcacaggttttgccatcacac
acgagtcttcctcagcaaatgcagtttagaggccagtttggtatgaagaatggttccagt
attgccgaccaagttcagtctgagcctggtagcagtagaagcatgccacagttgaacttg
ccccaaatttctagtattcgtccaggaatggttcctatgaatttgcatggtgcagcaccg
ccaaacttttcagtggttcgagagtcacggcaaaatatacacttgccttattcagtgccc
agttcatcaaatacaatggtatcacctttaaactatggaaacttagctcatgggcagggt
cctgctgccactactccacataatttagttccgggcatgcaatcctccttgccaatccta
aacggccctaatatgtcatttcaagtacccatggcaactttacagcctccaccgaggggt
tctcatccaggaactacccaggcatatcctattggtcaaaataatgggcaagttgctcct
aatgcctctgtagggaatggactttcagggttaatttcttctttaatggtccagggttta
atatctttaccaaagcaggattctgtcggagtggagttcgatcaagacagtcttaaggtt
cgtcatgaaagtgcaattacggctttatatgctgatcttccaaggcaatgcagaacatgt
ggccatcgatttaaagaccaagaagagcacagcaagcatatggattggcatgtaaacaag
aatcgaactctaaaaaaccgtaagacaaaaccttctccaaagtggtttgtgagtgttaac
atgtggctcagtggcacagaagccttgggaaccgaaacagctccaggtttcttgcccgtt
gagaatactgtggaaaaggaggaggatgaagaaatgtctgttcccgctgatgatagccag
aaggcttgcgcattatgtggagagccctttgacgattactatagtgacgagatggaagaa
tggatgtataggggagccgtatacatgcatgcaccaggtggattaacagttggaatggac
acatcgcagttaggtcctatagtgcatgctaaatgtaggtctgactcacatggggtttca
tcggaagactataagaaggatgaaatggaatcaaccgaagaaggtagtaaaaggaaaaaa
ccacggtgttaa
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