Salvia splendens (scarlet sage): 121755607
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Entry
121755607 CDS
T07627
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121755607
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121755607
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121755607
mRNA degradation factors
5'-3' decay
Decapping complex
121755607
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrC_M
Motif
Other DBs
NCBI-GeneID:
121755607
NCBI-ProteinID:
XP_042006856
LinkDB
All DBs
Position
11:342562..346709
Genome browser
AA seq
815 aa
AA seq
DB search
MERSGGKDLNGFTDQSSSSFSDSARFDASQYTFFGKGAVDEVELGGFEDEDGFASGVEGR
IGGEDDLNEYHLFDKDEGSGLGPLSEIDDLATTFAKLNKVVSGPRHPGVIGDRGSGSFSR
ESSSATEWARETDFPDWVDHHMSDSECYEENKRWSSQPHRSSLYRQESTPLYRTSSYPEQ
QQMLQHCSSEPILVPKSAFTSFPPPGSQQASPNSAHHISLSSLSGGLQLPFSSSSNSSLA
NSALHMSGLPHGYHYNPNMSRLSSPNISRHNQHQNQWSSHAGVLHGDQSILLNNIMQRQF
QNGLLPSHLLSPQQQRGQLSFQPSLAHFSALQSQIYNTYPSPAQLNKYGLADKKEAKPKS
GKSRHSVRFSHQGSDASSSHKSEINLPQIRSKYMTAEEIESILKMQLAATHGSDPYVDDY
YHQASLAKKSAETRSRFRFCPSHQKEQSSRSRNNSELQPHLHVDALGRVCFSSIRRPHPL
LEVDPPPSACGDGNAEQKLSEKPLEEEPMVAARITTEDGLSLLLEVDDIDRLLQFTQPQD
GGSQLNRKRHVLLEGLAASLQLVDPLGKSGNAVGLSPKDDIVFLRIVSLSKGRKLISKFL
QLLIPGSELTRIVCMAIFRHLRFLFGGFPSDAEATITINDLAKRVSLCVSGMDLNSLSAC
LAAVVCSSEQPPLRPVGSPAGDGASVILKSVLERATTLLRDPQFGGNYSIPNPALWQASF
DAFFGLLTKYCVSKYDSIVQSLVVQNAPNTEAIGPEAVKAVSREMPVELLRTSLPHTDES
QKKLLLNFAQRSMPVTVFNAHGGNSGQINPESVRG
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atggagagatctggagggaaagatctcaacggcttcaccgaccaatccagcagctcattt
tctgattcggcgcggtttgatgcgtcgcagtatactttttttgggaaaggtgcggtggat
gaagtggaattggggggatttgaagatgaagatgggtttgcttctggagttgaaggcaga
attggtggggaagatgatctcaatgagtatcatttgtttgacaaagatgagggatcagga
ttaggaccattatctgaaatagatgatctggctactacatttgctaagttaaacaaagtt
gtttctggacctaggcatcctggtgttattggtgatcgaggatctggatctttctcaagg
gaaagttcatcagctactgaatgggcacgagaaacagattttcccgattgggttgaccat
cacatgtcagactcagaatgctatgaggaaaacaagagatggtcatcgcagccacatcgt
tcttcattgtaccgccaagagtctacaccattatatagaacgtcatcataccctgagcag
cagcaaatgcttcaacactgttctagtgagcctattttagtcccaaaatcagcattcact
tctttccctccaccaggatcacaacaagcttcaccaaatagtgctcatcatattagtttg
tcatctctttctggtggacttcagttgcctttctcttcttcgagcaactcttcattagct
aattctgctctccatatgtctggcttgccacatggataccattataacccaaacatgtca
cgtttatcctcacccaatatctcacgtcacaatcaacatcaaaatcaatggagtagtcac
gctggtgttcttcatggggatcagtctattctcttaaacaatattatgcagcgtcagttt
caaaatgggttattaccatcacatctgctgtccccacagcagcagagaggacaactttca
tttcaaccatcattagcccatttttcagcattacagtcacaaatatataatacatatccc
tctcctgcacagttaaacaagtatggattagcagacaagaaggaagcaaaacctaaatct
ggaaagagcagacactctgtcagattttcccatcaagggtctgatgctagcagcagccat
aaaagtgagattaatttgccacaaattagatctaagtacatgactgctgaagagattgag
agcattcttaagatgcagcttgctgctacccatgggagtgatccgtatgtggatgattat
taccatcaagcaagtcttgctaagaaatctgctgaaacaaggtcaaggtttcgtttttgc
ccatctcaccagaaagaacaatcttctcgttcccgtaacaattctgaactacagccacat
ctccatgttgatgctcttggaagggtttgtttctcttcaattcgtaggccccatcctctt
cttgaagttgaccctcctccctctgcctgcggggatggtaatgctgaacagaaattatct
gagaagcctttagaagaggagccaatggttgctgctcggataactactgaagatgggtta
agtcttcttcttgaggtcgatgacattgatcggctgttacagttcactcaacctcaagat
ggtgggagccagcttaaccggaaacgccatgttctattagaaggattagctgcatctctt
cagctagttgatcccttgggaaaaagtggaaatgctgtgggtctctcccccaaggatgat
atagtgtttctacgaatagtttccctgtccaaaggccgaaaacttatttcaaagtttctt
cagctgctcattcccggtagtgagctgactcgaatagtttgcatggccatcttccgccat
ctaagatttttgtttggtggctttccatctgatgcggaagcaactattaccatcaacgat
cttgccaaaagagtctctctatgtgttagtggaatggatcttaattcactcagtgcttgt
cttgctgcagttgtttgttcctctgaacagccgccacttcgtccggtaggcagtcctgct
ggagatggcgcatcagtcattttgaagtctgtgttagaaagagctacaaccctgttaaga
gatcctcagtttggtggaaactacagcatccctaatcctgcactttggcaggcttctttc
gatgccttcttcggtctcctgacaaaatactgtgtgagcaagtatgacagtatagtgcag
tcgttagttgttcagaatgcaccgaacacagaggcaattggtccagaggctgtaaaggct
gtaagtagagagatgcccgtggaacttcttcgtactagtctgcctcatactgatgagagt
cagaagaaattgctactgaacttcgcccagaggtccatgcctgttactgtatttaatgct
catggtggaaacagcggacagataaaccccgagtctgtcagaggctga
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