KEGG   Salvia splendens (scarlet sage): 121755607
Entry
121755607         CDS       T07627                                 
Name
(RefSeq) protein PAT1 homolog 1-like
  KO
K12617  DNA topoisomerase 2-associated protein PAT1
Organism
sspl  Salvia splendens (scarlet sage)
Pathway
sspl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sspl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    121755607
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sspl03019]
    121755607
Messenger RNA biogenesis [BR:sspl03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     121755607
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     121755607
SSDB
Motif
Pfam: UvrC_M
Other DBs
NCBI-GeneID: 121755607
NCBI-ProteinID: XP_042006856
LinkDB
Position
11:342562..346709
AA seq 815 aa
MERSGGKDLNGFTDQSSSSFSDSARFDASQYTFFGKGAVDEVELGGFEDEDGFASGVEGR
IGGEDDLNEYHLFDKDEGSGLGPLSEIDDLATTFAKLNKVVSGPRHPGVIGDRGSGSFSR
ESSSATEWARETDFPDWVDHHMSDSECYEENKRWSSQPHRSSLYRQESTPLYRTSSYPEQ
QQMLQHCSSEPILVPKSAFTSFPPPGSQQASPNSAHHISLSSLSGGLQLPFSSSSNSSLA
NSALHMSGLPHGYHYNPNMSRLSSPNISRHNQHQNQWSSHAGVLHGDQSILLNNIMQRQF
QNGLLPSHLLSPQQQRGQLSFQPSLAHFSALQSQIYNTYPSPAQLNKYGLADKKEAKPKS
GKSRHSVRFSHQGSDASSSHKSEINLPQIRSKYMTAEEIESILKMQLAATHGSDPYVDDY
YHQASLAKKSAETRSRFRFCPSHQKEQSSRSRNNSELQPHLHVDALGRVCFSSIRRPHPL
LEVDPPPSACGDGNAEQKLSEKPLEEEPMVAARITTEDGLSLLLEVDDIDRLLQFTQPQD
GGSQLNRKRHVLLEGLAASLQLVDPLGKSGNAVGLSPKDDIVFLRIVSLSKGRKLISKFL
QLLIPGSELTRIVCMAIFRHLRFLFGGFPSDAEATITINDLAKRVSLCVSGMDLNSLSAC
LAAVVCSSEQPPLRPVGSPAGDGASVILKSVLERATTLLRDPQFGGNYSIPNPALWQASF
DAFFGLLTKYCVSKYDSIVQSLVVQNAPNTEAIGPEAVKAVSREMPVELLRTSLPHTDES
QKKLLLNFAQRSMPVTVFNAHGGNSGQINPESVRG
NT seq 2448 nt   +upstreamnt  +downstreamnt
atggagagatctggagggaaagatctcaacggcttcaccgaccaatccagcagctcattt
tctgattcggcgcggtttgatgcgtcgcagtatactttttttgggaaaggtgcggtggat
gaagtggaattggggggatttgaagatgaagatgggtttgcttctggagttgaaggcaga
attggtggggaagatgatctcaatgagtatcatttgtttgacaaagatgagggatcagga
ttaggaccattatctgaaatagatgatctggctactacatttgctaagttaaacaaagtt
gtttctggacctaggcatcctggtgttattggtgatcgaggatctggatctttctcaagg
gaaagttcatcagctactgaatgggcacgagaaacagattttcccgattgggttgaccat
cacatgtcagactcagaatgctatgaggaaaacaagagatggtcatcgcagccacatcgt
tcttcattgtaccgccaagagtctacaccattatatagaacgtcatcataccctgagcag
cagcaaatgcttcaacactgttctagtgagcctattttagtcccaaaatcagcattcact
tctttccctccaccaggatcacaacaagcttcaccaaatagtgctcatcatattagtttg
tcatctctttctggtggacttcagttgcctttctcttcttcgagcaactcttcattagct
aattctgctctccatatgtctggcttgccacatggataccattataacccaaacatgtca
cgtttatcctcacccaatatctcacgtcacaatcaacatcaaaatcaatggagtagtcac
gctggtgttcttcatggggatcagtctattctcttaaacaatattatgcagcgtcagttt
caaaatgggttattaccatcacatctgctgtccccacagcagcagagaggacaactttca
tttcaaccatcattagcccatttttcagcattacagtcacaaatatataatacatatccc
tctcctgcacagttaaacaagtatggattagcagacaagaaggaagcaaaacctaaatct
ggaaagagcagacactctgtcagattttcccatcaagggtctgatgctagcagcagccat
aaaagtgagattaatttgccacaaattagatctaagtacatgactgctgaagagattgag
agcattcttaagatgcagcttgctgctacccatgggagtgatccgtatgtggatgattat
taccatcaagcaagtcttgctaagaaatctgctgaaacaaggtcaaggtttcgtttttgc
ccatctcaccagaaagaacaatcttctcgttcccgtaacaattctgaactacagccacat
ctccatgttgatgctcttggaagggtttgtttctcttcaattcgtaggccccatcctctt
cttgaagttgaccctcctccctctgcctgcggggatggtaatgctgaacagaaattatct
gagaagcctttagaagaggagccaatggttgctgctcggataactactgaagatgggtta
agtcttcttcttgaggtcgatgacattgatcggctgttacagttcactcaacctcaagat
ggtgggagccagcttaaccggaaacgccatgttctattagaaggattagctgcatctctt
cagctagttgatcccttgggaaaaagtggaaatgctgtgggtctctcccccaaggatgat
atagtgtttctacgaatagtttccctgtccaaaggccgaaaacttatttcaaagtttctt
cagctgctcattcccggtagtgagctgactcgaatagtttgcatggccatcttccgccat
ctaagatttttgtttggtggctttccatctgatgcggaagcaactattaccatcaacgat
cttgccaaaagagtctctctatgtgttagtggaatggatcttaattcactcagtgcttgt
cttgctgcagttgtttgttcctctgaacagccgccacttcgtccggtaggcagtcctgct
ggagatggcgcatcagtcattttgaagtctgtgttagaaagagctacaaccctgttaaga
gatcctcagtttggtggaaactacagcatccctaatcctgcactttggcaggcttctttc
gatgccttcttcggtctcctgacaaaatactgtgtgagcaagtatgacagtatagtgcag
tcgttagttgttcagaatgcaccgaacacagaggcaattggtccagaggctgtaaaggct
gtaagtagagagatgcccgtggaacttcttcgtactagtctgcctcatactgatgagagt
cagaagaaattgctactgaacttcgcccagaggtccatgcctgttactgtatttaatgct
catggtggaaacagcggacagataaaccccgagtctgtcagaggctga

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