Salvia splendens (scarlet sage): 121755785
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Entry
121755785 CDS
T07627
Name
(RefSeq) tetratricopeptide repeat protein SKI3-like isoform X1
KO
K12600
superkiller protein 3
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121755785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121755785
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
121755785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_11
TPR_14
TPR_19
TPR_16
TPR_17
TPR_8
TPR_CcmH_CycH
TPR_9
TPR_15
TPR_6
TPR_20
TPR_12
BTAD
Motif
Other DBs
NCBI-GeneID:
121755785
NCBI-ProteinID:
XP_042007105
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Position
11:758015..765168
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AA seq
1178 aa
AA seq
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MALEGEEECDFSALKQLRESASSNPDDADVRFNLGVVLWEKGERRPELRHEAVEHFMIAA
KLNPQNAATFRYLGHYYARVSPEPQRALKCYQRAVALNPDDSDAGEAICDLLDEGGQDNL
MIAVCREASEKSARAFWAFRRLGYLQAHHKNWAEAIQSLQQAIRGFPTSADLWETLGLAY
GRMGMFTAALKSYGRAVELDDSRIFALVESGNISLMLGSFRKGIEQFQQALIISPHNVSA
NYGLASAFLGLAKECVNSGAFRWGASLLEEATEVSTHVTSLAGNFSCSWKLHGDIQLMYA
RCNPWTEEARPGQVDEISFKSSVSAWKRTCFIASRNAGRSYQRALHLAPWLANAYIDVAI
AADVSLSFKESAKDDWSVWPIAEKMCFGGILLEGYNDEFWVALACLSSNAALKQHALVRG
LQLDVSLAVAWAYLGKLYRLEGEKKLAQQAFDRARSIEPSLALPWAGMSADADVRKFEQN
EAYECCLRAVQISPVADFQIGLAKLALHSSCLSSSEVFAAIQQALLHIPHYPEAHNLNGL
VCESRSDYQGAVASYRLARYALKYFADETSESHSDDISINLARSLCMAGNASEAVEECEH
LRQKGQLDTVGLHIYALGLWRLGKNDMALSATRSLASSILSMEENLAAASISFICRMLYN
ISGQESAITSILKMPKQLFSSSKISFIVSAIHVLDPNNQLEAVVSSSRSFVTSREDIISM
HMLITVGKLLKSGNENSLGIQKGVDHLRKAVHMFPNSSVLRNLLGYLLLSSKERGYLCPA
TRCSSLDLSDYQKDDGLKSAYEIVGAGNVACYAIGSPNQKFPLPTCRRQCYSGSGAIQVL
QKYLHQEPWNFNARYLLAVNCLQKTRAEKFPQHGCHVVERLTAVALSDQNFSIKDVSRQY
QNFQLLLCAAEVNLQQGNNTECFRLVRSALSTSLHSNHLFFAHLLLCRAYASEEDFVNLH
KEYKYCLELGTYSHIGWICLKFIESRYGLQDDSTVLALKFEDCSKDLKMSWNIWTALFSF
VQGLISISLGDFVAAEEFFSQACCVPDDESCFFLCHGAICMELARQKCESHYITRAIRSL
KKAKDTSADPLPLVSLLLGQAEASLGSKEKWLVNLRDEWFSWPPENRSAELLFQMHLLSR
ESSHGDSTMRWILRAIHMNPSCSRYWKFLLKECDDSLI
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atggctctggaaggagaagaagaatgcgatttctccgcattaaagcaattgcgagaatca
gcgagttccaatccggatgacgccgatgtccgtttcaatctgggggtggtgctatgggag
aagggggagagaaggccagaactgaggcatgaagcggtggagcatttcatgattgcagct
aaactcaatccgcagaatgctgctacgtttagatacttaggtcattactatgctcgcgtt
tcgcccgagccgcaacgagctctgaagtgctaccagagagctgttgctcttaatcctgat
gattctgatgccggagaagcaatttgtgatttattggatgagggaggccaagataacttg
atgattgctgtttgtcgggaagcttctgagaagtctgccagggctttttgggcattccgt
cggctggggtaccttcaggctcatcataaaaactgggctgaagccatacagagccttcaa
caagccatacgtggatttcctactagcgctgatttgtgggagacactaggtcttgcttat
gggcgaatgggtatgtttacagctgcacttaagtcatatggtagagctgttgagttggac
gactcgaggatatttgctctggttgaaagtggaaatatttctttgatgcttggctccttc
agaaagggaattgagcaatttcagcaagcactgataatatcaccacacaatgtgtccgca
aactatgggcttgcttcggcttttcttggtttagcgaaggaatgtgtcaattcgggtgcc
tttagatggggagcttcacttttagaggaagcaactgaagtttccacgcatgtcacatct
ttagctggtaacttttcatgttcatggaagctacatggagatattcagcttatgtatgcc
agatgtaacccatggacagaggaagccaggcctgggcaagttgatgagatatctttcaaa
tcttctgtcagtgcatggaaaaggacctgcttcattgcttctagaaatgccggtcgctcc
tatcagcgtgctttgcacttggccccttggctagctaatgcatacattgatgttgccatt
gcagcagatgtcagtttatcttttaaggaatctgctaaagatgattggagtgtttggcct
attgctgaaaagatgtgcttcggtggtatattactcgagggttacaatgatgaattttgg
gtagcattggcatgcttatccagtaatgctgcactaaagcaacatgctttggtgcgtggg
ttacaactggacgtgtctctagcagttgcgtgggcttaccttgggaagctctatagactg
gaaggtgaaaagaaactggcccaacaagcatttgaccgtgctagaagtatagaaccttca
cttgcattaccatgggcaggcatgtcagcagatgctgatgttagaaagtttgagcagaat
gaagcgtatgagtgctgtctacgggctgtacagatatccccggttgcagatttccagatt
ggtcttgcaaagcttgcgttgcattcaagttgcttgtcatcttccgaggtctttgcagcc
atccaacaggcgttgctgcatattccacactatcccgaggctcacaatttgaatggtcta
gtatgtgaatcaagatctgattatcaaggtgcagtcgcctcctacaggctggccagatat
gctctaaagtattttgcagacgaaacatcagaatctcattcagacgatatatccatcaat
ttggcaagatcactttgcatggctggaaatgcaagcgaagcagttgaagagtgcgaacat
ttaaggcaaaaaggacagctcgatactgtgggcctacatatatatgctttaggtttatgg
agactgggcaagaatgatatggctctatctgcaacaagatcacttgcttctagcatttta
tctatggaagaaaacctagctgctgcctccattagcttcatctgtaggatgctttacaac
atatctggacaggaatctgcgatcacaagcattttgaaaatgcccaaacaactttttagc
agttcaaaaattagttttattgtttctgctattcatgttctggacccaaacaatcaactt
gaggcagttgtttcgagcagccgttcctttgttacatctcgtgaagacattatttcaatg
cacatgttgattacagttggaaaacttctgaaaagcggaaacgaaaactcccttggaatt
caaaagggagtagatcaccttagaaaagcagttcacatgttccctaacagcagtgtattg
agaaatcttcttggttatctgttgctatcaagcaaagaacggggatatctctgtcctgca
acccgatgctcttccctggatttgtctgactatcaaaaggatgatggtctcaaatcagca
tatgagattgttggtgctggaaatgttgcttgttatgccattggaagtccaaatcaaaag
tttccactaccgacctgcagacgtcaatgctattctggatctggggccattcaagtgctg
caaaagtatttgcatcaagagccttggaacttcaatgcaaggtatttacttgcggtaaac
tgcttacagaagactcgtgcagaaaaatttcctcagcatggttgccatgttgtagagcgg
ctaacagctgtggctctgtctgatcaaaatttctctatcaaagatgtatcaaggcaatat
cagaattttcagcttcttctctgtgctgctgaggttaatctgcaacaaggcaataatact
gaatgcttcagactcgtgagaagtgctttaagcacatcacttcatagtaaccatctcttt
ttcgcacatttgctactttgccgtgcatatgcctctgaggaagattttgtgaacctgcac
aaagaatacaaatattgtttggagcttggaacttattctcatattggttggatttgtttg
aagtttattgaatccagatatggcctacaagatgattctaccgttttagctctgaaattt
gaagattgctccaaagatctcaagatgtcatggaatatatggacggctttgttcagtttt
gtgcagggtttgatatccatttcgcttggtgattttgttgctgctgaagaattcttttca
caagcatgctgtgtgcctgatgacgagagttgtttctttctttgtcatggagccatttgc
atggagcttgccaggcagaagtgcgagtcacattacataacacgtgccataagaagtctg
aagaaagcgaaagatacctctgctgaccctttgcctcttgtttcactgttgctgggtcaa
gcagaagcaagccttggctcaaaagaaaagtggctcgtcaaccttcgcgatgaatggttt
tcttggcctccagaaaaccggtctgctgagctcctatttcaaatgcatttgctatctaga
gagtcttctcatggtgacagtacaatgagatggattctgcgagccatccatatgaatcct
tcgtgttcaagatattggaagttcttgttaaaggaatgtgatgactctctaatctag
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integrated database retrieval system
