Salvia splendens (scarlet sage): 121755802
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Entry
121755802 CDS
T07627
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121755802
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121755802
03041 Spliceosome [BR:
sspl03041
]
121755802
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
121755802
Spliceosome [BR:
sspl03041
]
Complex B
Other components
Prp19-related factors
121755802
Complex C
121755802
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
Mad3_BUB1_I
TPR_19
NRDE-2
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
121755802
NCBI-ProteinID:
XP_042007136
LinkDB
All DBs
Position
11:3018325..3023645
Genome browser
AA seq
909 aa
AA seq
DB search
MSIAQDLYPTEEDYLYEEEVLRNPNNLKLWWRYLIAKSDAPFKKRAIIYERALKALPGSY
KLWHAYLRERLEIVRNLPITHSQYQTLNNTFERALATMHKMPRIWTMFLQSLTHQKLITR
TRRTFDRALCALPVTQHDRIWECYLVFVSQRGVPIDTSLRVYKRYLKYDPSHIEDFIEFL
VNSQLWQEAAERLAGVLNDDQFYSIKGKTKHRLWLELCDLLTQHATEISGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRQLLEKARDVFEEGMTTVVTVRDFSVIFDAYSQFEDSVL
SIKMDNMDDSDEEDGNEDDIEEDDEEDDRLDIEKLRKRISCFWLKNDKDVDLRLARYEHL
MDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTVDPMKAVGKPHTL
WVAFAKLYETHGDVSNARVIFDKAVQVNYKAVDHLASIWCEWAEMELRHRNLKGALELMK
RATAEPSVEVKRRVAADGNEPVQMKVHKSLKLWTFYVDLEESLGTLESTRVVYEKILDLR
IATPQIIINYAMLLEEHKYFEDSFKVYERGVKIFKYPHVKDIWVTYLSKFVQRYGKSKLE
RAREIFEKAVEEAPAESVKPLYLQYAKLEEDYGLAKRAMRVYDQATKAVPPSEKLGMYEI
YIARAADIFGLPKTREIYEQAIESRLPDKDVKVMCLRYAELEKNLGEIDRARALYKHASQ
FANPKSDPDFWNKWHEFEVQHGNKDTYREMRRIMRSVDASYSQTHFILPEYLMQKDQMQT
LDEAKDVLKKAGVAEDEMATLERQLLPTTNETSAKDGGRRLGFVSAGLQQNGETTANTED
IELPEDSDPEDEEKVEIAQKEIPDAVFGGLVRKRDEADDKGKEATDTENKESDGHLGALE
RIKRMRRGA
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgtcgattgctcaggatctgtatcctaccgaagaggactacctctacgaagaagaggta
cttcgaaaccctaacaatctcaaattgtggtggcgatacctaatcgcgaagagcgacgcg
ccgttcaagaagcgcgccattatctacgagcgagctctcaaggccttgcccggaagctac
aagctttggcacgcctatctccgcgagcgcctcgagatcgtgaggaatctaccgattact
cactcgcagtatcagacgctgaacaacactttcgagcgagccctcgccacgatgcacaag
atgccccgcatttggactatgtttttgcagtctctgacgcatcagaagctgattactcgg
acgcggcgcacgttcgaccgtgcattgtgtgcgctgccggttactcagcacgaccgaatc
tgggagtgttatctggtgttcgtgtctcagaggggcgtgccgatagatacgtcgctgagg
gtgtacaagaggtacctgaagtatgatccaagtcatatcgaggattttattgagttcttg
gttaattcgcagttgtggcaggaggctgcagagaggttggctggggttttaaatgacgac
cagttttactctataaaggggaagacaaaacataggctatggttggaactgtgtgatttg
ttgactcagcacgccactgagatatcgggattgaatgtggatgcgataattagagggggg
attaggaagtttacggatgaagtggggagactgtggacttcgttggcagattattatatt
aggaggcagcttcttgagaaggccagagatgtctttgaggaagggatgacgactgtagtc
acagtgagggatttcagtgttatttttgatgcatattcacaatttgaggacagtgtgttg
tcaattaagatggacaatatggatgacagtgatgaagaagatgggaatgaggatgacata
gaggaggatgatgaggaggatgataggttggatattgagaagttgaggaagaggatcagc
tgtttttggttgaagaatgacaaggatgtggatttgcggttggcgaggtatgagcatctg
atggacaggaggccggagttagctaacagtgtgcttttgaggcagaatcctcacaatgtg
gagcagtggcatcggagagttaagctttttgaagggaatcccacaaaacaaattttgact
tacacagaagctgtgaggactgtggatcccatgaaggctgtggggaaaccccatactctg
tgggttgcatttgctaagttgtatgagactcatggagatgtttcaaatgcccgggtgatt
tttgataaggctgtgcaggttaattacaaggctgtcgatcatctagcaagcatttggtgt
gaatgggctgagatggagctcagacacagaaatttaaagggtgcactggaactgatgaag
cgtgctactgctgagccatctgtcgaggtcaagaggagagttgctgctgatggaaatgaa
ccagtgcaaatgaaggttcataaatcccttaagctttggacattttatgtggatttggag
gaaagcttgggtaccttggagtcaactcgtgtagtttatgagaaaatattggatctaaga
attgctacaccccagattatcataaactatgcaatgcttctagaagaacacaagtacttt
gaagactcatttaaagtttatgagagaggtgtaaaaatatttaagtacccgcatgtgaaa
gatatatgggtcacatatctttccaaatttgttcagagatatggaaaatcaaagctggaa
cgagctcgagagatatttgagaaggcagttgaagaggctcctgcagaatcagtgaaaccc
ctgtatcttcaatacgcgaaattagaggaagactatggtctggccaaaagagcaatgcgg
gtgtatgaccaggctacaaaagctgtcccacccagtgagaaattgggcatgtatgagata
tatattgccagggcagctgacatattcggtttgccaaaaactagggagatttatgagcaa
gctattgaatcacggctgccagacaaggatgtaaaggtcatgtgtttgagatatgctgaa
ctcgagaagaatcttggtgaaatcgatcgtgctcgtgcattatacaagcatgcatcacag
tttgctaatccaaaatctgatcctgacttctggaacaagtggcatgaatttgaagtgcag
catggaaacaaggatacatatcgggagatgcgcagaatcatgagaagtgttgatgctagc
tatagccagacgcactttatcctaccggagtatctgatgcaaaaggaccagatgcagacc
cttgacgaagctaaggatgttctcaagaaggcaggcgtggctgaggatgaaatggctaca
cttgagaggcaattactgcccactaccaatgaaaccagtgctaaagatggtggtagacga
ttaggattcgtgagtgctggtttgcagcaaaatggagagacaacagcaaatacagaggat
atcgagcttccagaagatagtgatcctgaagatgaggagaaggttgagatcgcacaaaaa
gaaattccagatgcagtgtttggaggattggtgcggaagagagacgaagcagacgacaaa
ggtaaagaagcaactgatacggaaaacaaagagagcgatggtcatctaggtgccttggag
agaatcaaacgaatgagacgaggcgcctag
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