Salvia splendens (scarlet sage): 121756140
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Entry
121756140 CDS
T07627
Name
(RefSeq) WD repeat-containing protein ATCSA-1-like
KO
K10570
DNA excision repair protein ERCC-8
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03420
Nucleotide excision repair
sspl04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121756140
09124 Replication and repair
03420 Nucleotide excision repair
121756140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sspl04121
]
121756140
03400 DNA repair and recombination proteins [BR:
sspl03400
]
121756140
Ubiquitin system [BR:
sspl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
121756140
DNA repair and recombination proteins [BR:
sspl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
121756140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
WDR55
EIF3I
NBCH_WD40
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_SPT8
WDR90_beta-prop_4th
Beta-prop_Nup120_160
Beta-prop_IFT140_1st
WD40_RFWD3
WD_LRWD1
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_LRRK2
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
121756140
NCBI-ProteinID:
XP_042007535
LinkDB
All DBs
Position
11:34727029..34731726
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AA seq
448 aa
AA seq
DB search
MWKETRERELGNLRPNLFSSRIFKSRISSIQLSNSKEIVYSHRGSVNSLQVDLTEGRYLL
AGASDATVAVYDVQRATDHDGRGRISKHKSLLLINKQHEHGHKYAISSAIWYPIDTGLFV
TGSYDHHINVWDTNTTQVVMNFKMPGKVYRNAMSSIARSHMLIAAGTEDVQVRLCDIASG
AFAHTLSGHRDGVMSLEWSTSSEWVLVTGGCDGAIRFWDIRRAGCFRVLDQSHSQLGRRP
PLLAATNKKSSSHQSSARARPPQKKSTNGNTVKSQGVTKVPSQMKGAKQRSHPGMISSHD
RATAHYGVVTGLKVTEDGMYLLSAGSDSRLRLWDIESGCNTLVNFETARLQSSKAIQMAV
SQDSALSFVPCMTTVKVFDIWSGQTKYAFRGHYENVNCCWYNAQDQELYTGGNDRQILVW
SPPKSISTEDDESKNGEAATSDQDNWSD
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgtggaaggagactagagagagagagctcgggaaccttcgccctaatttgttcagcagt
cgcattttcaaatctaggatttcgtccattcagctctccaattccaaggaaatcgtctac
tctcatcgcggctcagtcaactcacttcaggttgatttgacagagggtcgatatctactg
gctggtgcgtcggatgcaactgttgcagtttatgatgttcagcgagcgacagatcatgat
ggccgtggccgaatttcaaagcataagtcgttgcttctcatcaacaagcagcatgagcat
gggcataaatatgcgatatcatctgccatctggtatccgatcgacacggggttgtttgtt
actggttcttatgaccatcatatcaatgtttgggatacgaatactacacaagttgtaatg
aatttcaaaatgcctggaaaggtttatagaaatgctatgtcttcaatagcaagatcacac
atgttaattgctgctggaactgaagatgtccaagttcgattgtgtgatattgcttctggt
gcatttgctcacactttgtctggtcatcgcgatggagtaatgtcgttggagtggtccact
tctagcgagtgggtattggtcaccggaggatgtgacggtgcaatacgcttctgggacatc
agacgggctgggtgttttcgtgttttggatcaatcccattcccagttaggaagacgtcca
cctctccttgcagcaacaaataagaaatcatcatcacatcaaagttctgcaagagcccga
ccacctcaaaaaaaatcaactaatggtaacactgtaaagtcccagggtgtcactaaggtt
cctagtcaaatgaaaggtgcaaaacagagatcacatcctggaatgatttcgagccatgat
cgtgccacggcccattatggtgtagtaactggattaaaggtgactgaagatggcatgtat
cttctaagcgcaggttctgattcaaggttgagattgtgggatatagagtctggttgcaat
acactagtcaactttgaaactgcacgcctgcaaagtagcaaggccatacagatggctgta
tcccaagactcagctctttcttttgttccttgcatgaccactgtaaaagtctttgatatt
tggtctggccaaactaagtacgcatttcgtggccactatgaaaatgtgaactgctgttgg
tataatgcacaagatcaggagttgtatactggtggcaatgataggcaaattcttgtctgg
tctccacccaagtccatttccactgaagatgatgaatcgaagaacggggaggctgccacc
agtgaccaggataactggagtgattaa
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