Salvia splendens (scarlet sage): 121756220
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Entry
121756220 CDS
T07627
Name
(RefSeq) protein RAE1-like
KO
K14298
mRNA export factor
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121756220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121756220
03036 Chromosome and associated proteins [BR:
sspl03036
]
121756220
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121756220
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
121756220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML
EIF3I
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_SPT8
Beta-prop_WDR90_POC16_2nd
Beta-prop_HPS5
Beta-prop_DCAF12
Beta-prop_IFT140_1st
Beta-prop_NUP159_NUP214
Beta-prop_IFT122_1st
Motif
Other DBs
NCBI-GeneID:
121756220
NCBI-ProteinID:
XP_042007647
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Position
11:33946486..33951110
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AA seq
348 aa
AA seq
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MSAFGGSTANANPNRSVEVASPPSDSVSSLCFSSKANHLVATSWDNQVRCWEVQKQGTTI
TTVPKASISHDQPVLCSAWKDDGTTVFSGGCDKQVKMWPLLSGGQPVTVAMHDAPVKDLA
WIPEMSLLVTGSWDKTLRYWDLRQQNPTWVQQLPERCYALTVKHPLMVVGTADRNLVIFN
LQNPQTEFKRVVSPLKYQTRCLAAFPDQQGFLVGSIEGRVGVHHLDEAQASKNFTFKCHR
DGNDIYSVNSLNFHPVHQTFATAGSDGAFNFWDKDSKQRLKAMLRCSQPITSSAFNHDGS
IYAYSVCYDWSKGAENHNPSTAKTNIYLHQPLDAEVKGKPRVGTSNRK
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcattcggcggttcaacggctaacgccaatcctaatcgctcagttgaggttgcg
tcacctccgagtgattcagtttcgagcctgtgtttcagttctaaggccaatcacttggtc
gccacgtcttgggataatcaggtacgatgttgggaggtgcagaaacaaggaaccactatc
accactgttcctaaggcttcgatatcacatgaccaaccggtcttatgctcagcttggaag
gatgatgggacaactgtattttctggtggctgtgacaaacaagtcaagatgtggccatta
ttatccggtggacaacctgtaactgtagccatgcacgatgctcctgttaaagatcttgct
tggatcccagaaatgagtcttttagtcacaggaagctgggataagacacttaggtattgg
gatctgagacagcagaatccaacttgggtgcagcagcttcctgagcggtgctatgcgctt
actgttaaacatccccttatggttgttggcactgcggataggaatcttgtcattttcaac
ctacagaaccctcagacagagttcaagagagtcgtgtcaccattgaagtaccagactagg
tgtttagctgcattcccagatcagcaaggcttcttagttggctcaattgaaggcagagtt
ggggtacaccaccttgatgaggcacaagcaagtaaaaattttacttttaaatgtcacaga
gatggcaatgacatttactctgtcaactcactgaactttcatcctgtgcaccagacattt
gccactgctggatctgatggtgcctttaacttttgggacaaagatagcaaacagaggctt
aaggctatgctgaggtgcagtcagccgataacttccagtgctttcaaccacgatgggtcg
atatatgcgtattcggtttgttatgactggagcaaaggtgctgaaaatcacaatccatca
acagcaaagaccaatatttacctacaccaacccctggatgccgaggtcaagggcaaaccc
cgggtcggaacaagcaaccgaaagtga
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integrated database retrieval system