Salvia splendens (scarlet sage): 121756340
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Entry
121756340 CDS
T07627
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121756340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121756340
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121756340
Spliceosome [BR:
sspl03041
]
Complex C
Other components
Step II factors
121756340
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
nSTAND3
nSTAND_NTPase5
ATPase
AAA_30
PhoH
NB-ARC
T2SSE
TsaE
ABC_tran
Motif
Other DBs
NCBI-GeneID:
121756340
NCBI-ProteinID:
XP_042007792
LinkDB
All DBs
Position
11:complement(4416649..4422653)
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AA seq
715 aa
AA seq
DB search
MPSMASNNADHIATINHSNGSKADFMARRQQIEKHRKALPIAAVEKRLVEEVRNNDVLII
VGETGSGKTTQLPQYLFNGGFCRNGGVIGVTQPRRVAAVTVAKRVAEECGVTLGQKVGYA
IRFDDATSASTRIKYMTDGLLLREALLDPYLSKYSVIVVDEAHERTVHTDVLLGLLKTVQ
KTRSQGVSKTVHNQPIEAENGIQSEKENVVESTSILKPNQGKNLSPLKLIIMSASLDAKI
FSDYFGGARAVHVQGRQYPVDVLYTHQPETDYVDATLITIFQIHLEEGPGDILVFLTGQE
EIESIERLIQERLPKLPESKCKLLVIPIFASLPSEKQMKVFIPPPNGYRKVILATNIAET
SVTIPGIRYVIDPGMVKVRTYDASTGIEPLIIVKTSKAQALQRSGRAGREGPGKCYRLYP
ENEFYKLKASTTPEIKRCNLANVILQLKALGVDDILGFDFIEEPDRMAIIKSMELLFLLG
ALTDGSKLSDPVGHQMARLPLDPIYSKALVVANQFNCLEEMLIIVALLSVESIYYAPREK
LEESRTALRSFSSLEGDHLTLLKIYCASDEFLEKSKLVGSPDKAEKKLRKWCKQNFINSR
SLKHARDIHSQIRRNVEQMGLSVTSCGDDTLQMRRCLAASFFLNAALKQPDGTYRALSSG
LAVQIHPSSVLFRMKPECIIFNELVRTNQNYVRNVSTIDYLWLPELAPQFYALPE
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcaatggcctccaacaacgctgatcacattgccacaatcaatcattccaatggc
tctaaagctgactttatggccaggaggcaacaaatcgagaagcacaggaaagctctgccg
attgctgctgtcgaaaagaggctggtggaggaggttcgcaataacgatgttctaattatt
gttggggaaactggcagtgggaagacaacacagttaccgcagtatctatttaatggaggg
ttttgccgcaatggaggagtaattggggtaactcaacccagacgtgttgccgctgttaca
gttgctaaaagggttgctgaggaatgtggagtaacattaggacaaaaggttggatatgcc
attagatttgatgatgccacttctgcttcaacaaggataaaatacatgacagatggcttg
ttactcagggaagcattattggatccatatctctctaaatattcagttattgttgtggat
gaggctcatgagagaacagttcacactgatgtattacttggtctattgaagaccgttcaa
aaaacaaggtcacagggtgtcagtaagaccgtccataatcaacctatagaagctgagaat
ggcatacagtcggaaaaagagaacgtggttgaatccaccagcattctgaagcctaatcaa
ggcaaaaatttatccccattgaagttaattattatgtctgccagtctggatgcaaaaatc
ttttccgattattttggtggtgctagggctgtgcatgtccaaggtcgacaatatcctgtt
gatgtactatacactcatcaaccagagactgattacgtagatgcaacattgattaccatt
tttcagatacatctagaggaaggaccaggtgatatacttgtgttcttgactggacaagag
gagattgaatctattgagaggctcatccaggagcgccttccaaagttacctgagagcaaa
tgcaagcttctggttattccgatatttgcatctcttccatcagagaaacaaatgaaagtt
ttcatacctccacccaatggttaccgcaaggtaatattagctactaatattgctgagaca
tcagtgacaatacctggcatcaggtatgtcattgaccctggaatggtcaaagtacgcaca
tatgatgcttctactgggattgagccattgatcattgttaaaacctcgaaagctcaagca
cttcagcggagtggtcgtgctggccgagaaggacctgggaaatgctaccgcctttatccg
gagaatgaattttacaaactgaaagcttctacaacacctgaaattaaaagatgcaacctt
gcaaatgtaattttgcagcttaaagctctaggtgttgatgatattcttggtttcgatttc
attgaagaaccagacaggatggccatcatcaagtcaatggagctgttattcttgttaggt
gctcttacggacggaagtaaattgtctgatccagttggtcatcaaatggccaggcttcca
ctggatcctatttattctaaggctcttgttgttgccaatcaatttaactgcttggaagaa
atgttaataattgttgcgttgctctcagtcgaatccatatattatgctccccgtgaaaag
ttggaagagtcacgaactgccttgagaagcttttcaagtttagagggcgatcatttgacg
ttactaaaaatatattgtgcttcggatgagtttttggagaagagcaagctggtaggcagt
cctgataaggctgagaagaaactcagaaaatggtgcaagcagaacttcatcaacagccgc
tctttaaaacacgcccgcgatatccatagtcaaatacgaaggaatgtggagcaaatgggt
ctttctgtcacttcatgtggggatgacactcttcaaatgcgcagatgcctagctgcttcg
tttttcctaaatgcagctttgaagcagcctgatggtacttacagggctttgtctagtggt
ctggcagtgcagattcatccttcgtctgtattattccggatgaaaccagaatgcataatc
ttcaatgaattagtcaggactaatcagaactatgtccggaatgtttctaccatagattac
ttgtggttacccgagctggctcctcaattctacgccttaccggaatag
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