Salvia splendens (scarlet sage): 121756488
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Entry
121756488 CDS
T07627
Name
(RefSeq) WD repeat-containing protein 75-like
KO
K14552
NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121756488
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sspl03009
]
121756488
Ribosome biogenesis [BR:
sspl03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
121756488
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR75_1st
Beta-prop_WDR75_2nd
WD40_WDHD1_1st
WD40
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
WDR55
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
121756488
NCBI-ProteinID:
XP_042007978
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Position
11:3706495..3713422
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AA seq
802 aa
AA seq
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MFTGGKSFVSLPPAFSNDAKRLLVCTGNTVSIFSTSTGLQTCELEGHEAQVTSVIVVPAT
NPTSKVLCYCWTSSLDGKIRYWDFAAPELMKTIDIRFRIHSMVIPSLLHPRNDSTGKLPD
LYAYISTEDVKQEGKPSSFGIQKCNLTKSRIVGGVTLAETRKPGHVTISPSGKYIGTCEK
RKLRIWEIPAKDSEHVGYKKVRLHHTRSITTMAFHPTERVVAAGDVTGRILLWRGVGRET
FSNSKSSNGRMNTDGEDRPGVRDTDDADSCTTWHWHSSEVNVLFFSSDGAYLYSGGKEGV
LVVWQLDTGKKKFLPRIGSPLLYFINSPDPTLSSISCADNQIQLLRMPSMEILRSISGIK
LPSSHMDMYEGFGSVVVFNPTAGLIAVPAENYRVQFYSLFDDREISQVQICERNHQPGDE
ITVKVNLVALSRDGSTMCTVETRLPEEGIGSLVTLKFWVCGSQKKQVSLSTVIYEPHRDA
EISCIAFRPTGNMAVSSSHGGDFKVWVHRHELTPKDETVQRSGWKCHAVGSYKKKPMSTA
AFSSDGSVLAVAADKVITLWDPDRNTLLAVIGDSLEPITNLTFIGKSEYLVSASASRGSK
SSNPQLTVWSMSKLCVAWSYRLDIEAITCSMDDSTFAVLARSKPNGSADESSQHAEDMIL
LFNAEKAVPLSVWFVSKAQGGGLSFVSSDEDKVSGTKATDEVLAYINGAREYVLLNPHSE
QDISRQRGFTNLDDTDTHGYASVYGELPEFSLKADQTAFPSMPSGKTWKGIFSGPSHALP
PLPKLCSDFLESLLERRSGVVE
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgtttacaggcggaaagagcttcgtctcgttgccgccggcgttctcgaatgacgccaag
cgcctccttgtttgcaccggaaacaccgtctctatattcagcacctccactggtttacag
acttgtgagttggaaggacacgaggcgcaggtgacttcggttatagttgttccggctact
aatccgacaagtaaagtcttgtgctattgctggacgtcttccctcgatgggaagatcagg
tactgggacttcgccgcaccggaattgatgaagactattgacattcggttccgaattcac
tctatggtgattccaagtttattacacccgagaaatgacagcactggcaagcttcctgat
ctttatgcttatatctctaccgaggatgtgaaacaggaaggaaaaccaagctcttttggt
atacagaaatgtaaccttacaaagtcacgcatagttggtggagttactctagctgagact
cggaaaccaggtcatgtaaccattagtccgtcagggaagtacattggaacgtgtgaaaag
cgcaagctccgtatatgggaaatacctgctaaagattccgagcatgttggttacaagaaa
gtcagattacatcatacaaggtcaattactaccatggcttttcatccgactgagagggtg
gtagcagcaggcgatgtcacaggaaggatcttactatggagaggtgttgggcgtgaaaca
ttctccaatagtaagtcatctaatggccgaatgaacacggacggagaggataggcctgga
gtgagggatacagatgatgcagattcatgtaccacatggcattggcattcttcagaagtg
aacgtgctcttcttctcttccgatggtgcttatttatactcaggtggaaaagaaggagtt
ttggttgtttggcagttagatactggaaagaaaaagttccttccaaggattggctcccca
cttctgtatttcatcaattctccagaccctacattatcatctatatcatgcgcagataat
caaattcaacttcttagaatgccttcgatggagatcttgcggtccatttcggggatcaag
cttccaagttcacatatggatatgtatgagggatttggctcggttgttgttttcaatccc
actgctggcttgattgcagtacctgcagagaactaccgtgtccaattttacagtttgttt
gatgatcgtgagatttctcaggtgcaaatctgtgagcgaaaccatcagcctggcgatgaa
attacggtaaaagtgaatttggtagctctttctcgagatggttcaaccatgtgcactgtt
gaaaccagacttcctgaagaaggaataggcagccttgtgactcttaagttctgggtgtgc
ggttcacagaaaaaacaagttagcttgtccactgtcatatatgaaccccacagagatgct
gagatctcatgcatagctttccgaccaactggcaacatggctgtcagttcatcacatggt
ggagattttaaggtgtgggtgcataggcatgagctcacccctaaggatgagactgttcaa
aggagtggctggaaatgtcatgctgttggatcatacaagaagaagcctatgtctactgct
gcattttcaagtgacgggtctgtcctcgctgttgctgcagacaaagtcattaccttgtgg
gatccagataggaacacgctgctggctgttattggggatagtctagagccaattactaat
cttacattcattgggaagtcagaatatcttgtatctgcttctgcttcacgagggtcaaaa
agctcaaatccacaattgactgtgtggagtatgtcgaagctgtgcgtagcttggtcctac
aggcttgacatagaggcaatcacttgttcgatggacgactccaccttcgctgttcttgct
cgatctaagccaaatggatcagcggatgaatcatcacagcatgcagaggatatgattttg
ttgttcaatgcagaaaaagcagttcccttgtcggtgtggtttgtgagcaaggctcaagga
ggaggcctttcatttgtcagttcagatgaagacaaagtttccggaacaaaagccacagat
gaagtacttgcttatattaatggtgctcgtgagtatgttctcttgaacccacatagtgag
caagacatttctcgtcaacgaggcttcactaaccttgatgatacagatacacacgggtat
gcatcagtgtatggtgagttgccagagttcagcttgaaagcagatcagaccgcattccca
tcaatgccatcgggaaaaacctggaaaggtatatttagtggaccgtctcatgctcttcct
cccctgcccaagttatgctcagacttcctagaatcattgttggagaggaggtctggtgtt
gtggaatag
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