Salvia splendens (scarlet sage): 121756492
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Entry
121756492 CDS
T07627
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121756492
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121756492
04121 Ubiquitin system [BR:
sspl04121
]
121756492
03036 Chromosome and associated proteins [BR:
sspl03036
]
121756492
03400 DNA repair and recombination proteins [BR:
sspl03400
]
121756492
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
121756492
Ubiquitin system [BR:
sspl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
121756492
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
121756492
DNA repair and recombination proteins [BR:
sspl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
121756492
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-C3HC4_2
zf-RING_2
zf-RING_UBOX
zf-C3HC4
RTT107_BRCT_5
zf-HC5HC2H_2
zf-C3HC4_3
zf-RING_5
zf-RING_6
zf-C3HC4_4
zf-RING_10
PTCB-BRCT
zf-Nse
Motif
Other DBs
NCBI-GeneID:
121756492
NCBI-ProteinID:
XP_042007983
LinkDB
All DBs
Position
11:complement(2009389..2014276)
Genome browser
AA seq
958 aa
AA seq
DB search
MADASHLERMGRELKCPICLSLFNSAASLTCNHVFCNVCIEKSMKASSSCPVCKVPYMRR
EIRPAPHMDNLVSVYKSMEVASGVSIFNTQTEVSTGPLVQNDGHTKPESSETGNKKQPGK
GGSKSASVFPTNKRVQVSPYTSARTEMERENLNDGTAEINRNETNSSYVIVQNNMPSTYE
KGKTHLPPFFWLRDEEDMEKSSQQTNDNLVMYTPPEAPCFSDIKDSDDERGDCNLSNNVD
FFDSEMFDWTQRPCSPELCSTPPTIQIEEHTAEEDVALKRVHATSTETAGQKNRPNSAVG
KRKREKVSESKGRTRASNKKANAKEPEKDKKTKCISEVTAVCAELGNVIYQDMQEGTKDT
PMIQKGKSREGKKVLSDASVQEKDVLSLSDGVEPLASSKGAACTQVSAPEICGKSNVGHT
KSKTSAEDDKNSKKPTQLPTSGSKEKAKKSEIGKRVLDTEQGKEGLISQLLTNPTGIHEE
VVDKCVKRKYGKICRKSPSSAKKVKFSAQSVCKDNHGGKALGAEKDVTTDHLSEDIQVQR
DQSDMKTPSKVDKSFSSLSGHALLKCNTSPSTICCAFCQSSEESEASGTMVHYVGGKLVM
DDARKNAIHVHKNCAEWAPNVYFEDDTVVNLENELSRSRRIRCCCCGIKGAALGCYDNTC
RKSFHVPCARLTPECRWDSENFVMLCPVHKSSQLPNGTPQSQSRKKSKSSAERKSCIHQD
KVKTNEEGKDRSPVQWKSWKTFKNLVLCCSALTNTEKETVTEFENLSGVTILKNWDSTVT
HVIASTDENGACRRTLKFLMGVLEGKWILSVQWIRACIEAGEIADEEQFEISVDIHGIRN
GPKLGRLRLLNKQPKLFDGYTFHLMADFTPSYRGYLHDLVFAAGGKVLNRKPVAGSSETT
FIIYSVELPGQCKPSNGNSVVDQRRASAEALASCAGARVASNSWIMNSVAGYKQQTVG
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcatcacatctggagcgaatgggaagggagctaaaatgccctatatgtttg
agtctgtttaattcagccgcttcactcacctgcaatcatgtgttttgcaatgtgtgtatc
gagaaatccatgaaagcatcatcgagttgtcctgtttgtaaagttccatacatgcgaaga
gaaattaggccagctcctcacatggataatttggtaagcgtttacaaaagcatggaagta
gcatctggagtcagtatctttaacactcagactgaagtttcaactggtcctttggtccaa
aatgatggccacacgaaaccagaatcttcagaaactgggaataaaaaacaacctggaaag
ggaggatcaaaaagtgcatcagttttccctacaaataaaagggttcaggtatcaccatat
acaagtgcaaggactgaaatggagcgagaaaacctgaatgatggaactgctgaaatcaac
agaaatgaaactaatagcagttatgttatagtacaaaataatatgccttctacttatgaa
aaggggaaaacccatttacctccatttttctggctgagagatgaagaggacatggagaag
tcaagtcagcagacaaatgacaatctggttatgtatacaccaccagaagctccttgcttc
agtgacatcaaagattcagatgatgagagaggagattgtaacttatcaaacaatgtggat
ttctttgatagtgaaatgtttgattggacacagaggccttgctctcctgaactttgttca
actcctccaactatacagattgaagaacatactgctgaagaggatgtagccttaaaacgt
gtacatgccacctcaacagaaacagctggtcaaaagaacagacctaatagtgcagtaggc
aagcgtaaaagggaaaaagtctctgaaagcaaaggcagaacgagagcttctaataagaaa
gccaatgcaaaggagcctgaaaaggacaagaaaactaaatgcatttctgaagtaactgca
gtctgtgctgaattaggcaatgtaatctatcaagatatgcaagagggtactaaagacact
ccaatgattcaaaaaggaaaatccagagaaggcaaaaaggtcctctctgatgctagcgtt
caagagaaagatgttctatctttatctgatggggtagagcctctagcaagcagcaagggt
gcagcatgcactcaagtttcagcaccagaaatttgtggaaagagcaatgtgggacataca
aagtcaaaaacgagtgctgaagacgacaaaaactccaagaaaccaactcagctaccaaca
tctggtagtaaagaaaaagctaaaaaatctgaaattggaaaaagggtcttagatactgag
caaggcaaagaggggttgatttcccagctgctaactaatccaacaggaattcatgaagaa
gttgtggacaaatgtgtcaaaaggaagtatggaaaaatctgtagaaagtcaccaagttct
gcaaagaaagtcaaattctctgctcagagcgtgtgtaaggacaaccatggtggtaaagct
ttaggtgctgaaaaggatgtgaccacagatcacttatcagaagatattcaagttcaaagg
gatcaatcagacatgaaaactccatcgaaagttgataaatcattttcctcccttagtggg
catgctttgctaaaatgtaatacatctcccagtacaatttgttgtgctttctgtcaatca
tctgaagagtctgaggcttcagggaccatggttcactacgttggcgggaagttggtgatg
gatgatgcaagaaagaatgctatacacgttcacaagaactgtgctgaatgggcacccaat
gtgtattttgaagatgatactgttgtcaaccttgaaaatgagttgtctagaagtcgaaga
attagatgctgttgctgtggcatcaagggagctgctcttgggtgttacgacaacacttgt
cgcaagagctttcacgttccttgtgctaggttgactccagaatgccggtgggattctgaa
aactttgtcatgctatgtccagttcataaatcatctcaactgccaaatggtacgcctcaa
tctcaatcaaggaagaaaagtaaatcttctgctgaaagaaaatcttgcatccatcaagat
aaagtgaaaaccaatgaagaaggcaaagacagatcaccggtacagtggaagtcttggaag
acgtttaaaaatttggttctctgctgctcagctctcaccaatacagagaaagaaactgtt
acagagtttgagaacttgtctggagtaacaatactaaagaactgggactcaaccgtcacc
catgtaattgcttcgacagatgaaaatggagcatgcagacgtactctcaaattcttaatg
ggtgtcttggaaggaaaatggattttaagtgttcaatggataagagcttgcattgaagct
ggagagatagctgatgaggaacagtttgagatctcagtcgacattcatggaatcaggaat
ggaccgaagctcggacgattaagacttctaaacaagcaaccaaaactgtttgatggctac
acattccatctcatggcagatttcacaccttcatacagaggatatctccatgatcttgtg
tttgctgctggaggaaaagttctgaacaggaagcccgttgctggaagctctgagacgacc
ttcatcatttacagcgtggagcttcccggacagtgcaagccatccaacggaaactcagtc
gtggaccagcgacgtgcaagtgcagaagctttagcctcttgtgctggagcccgggtagcg
agcaattcatggattatgaattctgttgcaggttacaaacagcaaacagttggttaa
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