Salvia splendens (scarlet sage): 121756535
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Entry
121756535 CDS
T07627
Name
(RefSeq) WD-40 repeat-containing protein MSI1-like
KO
K10752
histone-binding protein RBBP4
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03082
ATP-dependent chromatin remodeling
sspl03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121756535
03083 Polycomb repressive complex
121756535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sspl03036
]
121756535
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
121756535
Histone modification proteins
HAT complexes
HATB complex
121756535
HDAC complexes
Sin3A-HDAC complex
121756535
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
121756535
PRC2.2
121756535
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
121756535
Heterochromatin formation proteins
Other heterochromatin formation proteins
121756535
Chromatin remodeling factors
NuRD complex
121756535
NuRF complex
121756535
NuRF complex (fruit fly)
121756535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1C_H4-bd
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
WD40_RFWD3
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
eIF2A
MIOS_WD40
WD_LRWD1
Beta-prop_HPS5
Beta-prop_RIG_1st
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_NUP159_NUP214
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
121756535
NCBI-ProteinID:
XP_042008035
LinkDB
All DBs
Position
11:34105238..34108681
Genome browser
AA seq
424 aa
AA seq
DB search
MGKDEDEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDRDEPSGKE
YSVQKMILGTHTSENEPNYLMLAQAQLPLEDAENDARQYDDERSEFGGFGSANGKVQIIQ
QINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGTCNPDLRLRGHSTE
GYGLSWSNFKQGHLLSGSDDAQICLWDINATPKNKALDAMQIFKIHEGVVEDVAWHLRHE
HLFGSVGDDQYLHIWDLRNPVMSKPVQSVVAHQSEVNCLAFNPFNEWVIATGSTDKTVKL
FDMRKLSTALHTFDCHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE
DGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDNILQIWQMAENIYHDEDDLPGDDA
AKPS
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggggaaagacgaggacgaaatgcggggggaaatcgaggagcgcctcatcaacgaggag
tacaagatttggaagaagaacaccccattcctctacgatctggtcatcacacacgccctc
gagtggccctccctcaccgtcgagtggctgcccgaccgcgacgagccgtcggggaaggaa
tactccgtgcagaagatgatcctcggcacccacacctccgagaacgagcccaattacttg
atgctggcgcaggcgcagctgcccctcgaggatgctgagaatgacgctcgccagtacgac
gatgagcgctctgaatttggtggattcggcagcgctaatggcaaggtacaaattatccag
caaattaatcatgatggcgaggtgaatcgtgctcgctatatgcctcagaacccatttatt
attgccaccaagactgttagtgccgaagtttatgtcttcgattatagcaagcacccatct
aagcctcccttggatggtacgtgcaaccctgatttgaggcttaggggacatagtaccgag
ggatatggtttatcgtggagcaatttcaagcaaggccatttgttgagtggttcagatgat
gcccaaatatgtttatgggatataaatgcaactccaaagaataaggctttagatgccatg
caaattttcaagattcatgaaggtgtggttgaagatgtagcatggcatctgaggcacgaa
cacttgtttggatctgttggagacgatcagtatttgcacatatgggatctccgtaatcca
gtaatgagcaagcctgtacaatctgtagttgctcatcagagtgaggtaaactgcttagcc
ttcaatccgtttaacgagtgggttatagcaaccggatctactgacaagactgttaaatta
ttcgatatgagaaagctttctactgccctccacacctttgattgccacaaggaggaggta
ttccaggttggatggaatccgaagaacgagaccatcttagcttcatgttgtcttggtagg
agattaatggtctgggatctcagcaggattgacgaagaacaaacaccagaggacgcggag
gatgggccgccagagttgttattcatccacgggggccatacaagcaagatatcagacttc
tcgtggaacccgtgtgaggattgggttgttgctagtgtggctgaagataatatactacag
atttggcagatggcggaaaacatctaccatgacgaagatgatctgcccggagacgacgct
gccaagccttcctag
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