Salvia splendens (scarlet sage): 121756854
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Entry
121756854 CDS
T07627
Name
(RefSeq) eukaryotic initiation factor 4A-3-like
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03013
Nucleocytoplasmic transport
sspl03015
mRNA surveillance pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121756854
09122 Translation
03013 Nucleocytoplasmic transport
121756854
03015 mRNA surveillance pathway
121756854
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121756854
03041 Spliceosome [BR:
sspl03041
]
121756854
03009 Ribosome biogenesis [BR:
sspl03009
]
121756854
03012 Translation factors [BR:
sspl03012
]
121756854
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121756854
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121756854
mRNA cycle factors
Stress granule specific factors
121756854
Spliceosome [BR:
sspl03041
]
Complex C
Other components
EJC/TREX
121756854
Ribosome biogenesis [BR:
sspl03009
]
Eukaryotic type
90S particles
Helicases
121756854
Translation factors [BR:
sspl03012
]
Eukaryotic type
Initiation factors
eIF-4
121756854
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
Helicase_RecD
PhoH
Motif
Other DBs
NCBI-GeneID:
121756854
NCBI-ProteinID:
XP_042008199
LinkDB
All DBs
Position
12:complement(21244207..21247558)
Genome browser
AA seq
408 aa
AA seq
DB search
MATTAAQRGGGGRRAMEEDDAKLVFETSKGVEPIMSFDEMGIKEELLRGIYNYGFEKPSA
IQQRAVLPIISHRDVIAQAQSGTGKTSMIALTVCQIVDTKSSEVQALILSPTRELASQTE
KVILAIGDYINVQAHACVGGKSVGEDIRKLEHGVQVVSGTPGRVCDMIKRRTLRTRAIKI
LILDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPNEILEITSKFMTDPVRILVKR
DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTAKMRENNFT
VSSMHGDMPQKERDAIMGEFRSGQTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIH
RIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggcgactacggcggctcagagaggcggcggggggcggagagctatggaggaagacgac
gcgaagctcgtgttcgaaacttcgaaaggtgtggagccaatcatgagcttcgacgagatg
ggaataaaggaggagctcctccgaggaatctataattacggcttcgagaagccttccgcc
atccaacagcgcgcagttcttcctattatctcacaccgtgacgtcatagctcaggcgcaa
tccggtactggaaagacttcaatgattgccctaacagtttgccagattgtcgataccaag
tcctccgaggtccaagccttgattttatctcctacaagagagttggcttctcaaacagag
aaagtgatactggcaattggtgactacataaatgtacaagctcatgcttgtgttggaggg
aaaagtgtgggtgaggatataagaaaactagagcatggagttcaggtggtatcaggtact
cctggtagagtttgtgacatgatcaaaaggagaactttgcgtactagagcaatcaaaata
ttgatcctggacgaatctgatgaaatgttgagcaggggatttaaggatcagatttatgat
gtctacagataccttccacctgaccttcaggttgtcttaatctctgccaccctcccaaat
gaaatattggagattacaagtaaattcatgactgatccagttcgcatcttagtaaagcgt
gatgaattgaccctggagggtatcaagcaattcttcgttgcagttgaaagagaagaatgg
aaatttgatacgttgtgtgatttatacgacacacttaccataacccaggcagttatattt
tgcaacacaaagcgcaaggttgattggctgacagcgaaaatgcgtgagaataactttact
gtctcatccatgcatggcgatatgcctcaaaaggagcgagatgcgattatgggtgaattc
cggtctggtcaaactcgtgtgcttatcacaacagatgtttgggctaggggattggatgtt
caacaggtttctctggtgattaattatgatcttccaaacaatcgagagctctacatccat
agaatcgggcgatctggtcgttttgggcgaaagggtgttgccataaactttgtcaaaagt
gatgacatcaagatccttagggatatcgagcagtattacagtacacagatcgatgaaatg
ccaatgaacgtggccgatttgatttaa
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integrated database retrieval system
