Salvia splendens (scarlet sage): 121756997
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Entry
121756997 CDS
T07627
Name
(RefSeq) U3 small nucleolar RNA-associated protein 21 homolog isoform X1
KO
K14554
U3 small nucleolar RNA-associated protein 21
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121756997
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sspl03009
]
121756997
Ribosome biogenesis [BR:
sspl03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
121756997
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Utp21
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
EIF3I
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_HPS5
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_EIPR1
PEP5_VPS11_N
Beta-prop_IFT122_1st
Beta-prop_VPS8
NBCH_WD40
WD40_like
Ge1_WD40
Beta-prop_LRRK2
Beta-prop_IP5PC_F
Cytochrom_D1
VPS8_N
Motif
Other DBs
NCBI-GeneID:
121756997
NCBI-ProteinID:
XP_042008391
LinkDB
All DBs
Position
1:complement(46920403..46925246)
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AA seq
909 aa
AA seq
DB search
MGIFEPFRAIGYITTPVPFSVQRLGTETFVTVSVGKAFQIYNCAKLNLVLVGPQLPKKIR
ALASYRDYTFAAYGCNIAVFKRAHQVATWESHNAKINHLLLFGEHVLSLDVKGNMFIWAF
KGITENNSPFGHISLGNKFTPSCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKSW
SSAISCCVSSPALDVVAVGCSDGKIHVHNIRYDEEVVTFSQSTRGSVTALSFSTDGQPLL
ASGGSSGVISIWNLEKRRLHSVIGEAHDCSIVSLHFLANEPVLMSSSADNSIKMWIFDTS
DGDARLLRFRSGHSAPPKCIRFYSNGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVSKR
AKKLKLKETEIKLKPVIAFDVAEIRERDWCNVVTCHMDTAQAFVWRLQNFVIGEHILSPC
PQNPTPVKACAISACGNFAVVGTAAGWIERFNLQSGISRGSYVDMSEGRSCAHNGEVVGV
SCDSTNTVMISAGLNGDVKVWNFKGRELKSRWEIGCPVVKIVYHRYNGLLATVADDLVIR
LFDVVALRMVRKFEGHTDRITDACFSEDGKWLMTSSMDGTLRIWDVILARQIDAIHVDVS
VTALSLSPNMDVLATTHVDQNGVYLWVNQAMFSAPSKSGAHGSGKDIVNVNLPSISTGNS
LDSNSEEADKSSPQEVPDVPLSTPGHEQIPDLVTLSMLPKSQWQSLINLDIIKARNKPIE
PPKKPEKAPFFLPSIPSLSGEIVFKTRESAEGDKDSQAGETKSRKIKADSPVSEFLQFLQ
HSTEEKDFAAFTEYIKGLSSSTLDMELRMLQIVDEDDSDQESSNRPEIHFIGLLLDYFTQ
EISCRNNFEFIQAMIRLFLKIHGESVRCQPILQEKAEKLLHIQTAVWQKIDKLFQSTRCM
VTFLSNSQF
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atggggattttcgagccttttcgagcaattggatacataaccactccagtgcccttctcc
gtacagcgtctcggcaccgaaacctttgtcaccgttagcgtcggcaaggcttttcaaata
tacaactgcgcgaagctcaatttagtactcgttgggccacaactaccaaagaaaatacga
gctttggcttcgtatcgggactacacatttgctgcgtatggatgtaatattgctgttttt
aaacgtgctcatcaggttgcaacatgggaaagccataatgctaagattaatcacttgcta
ctttttggtgaacatgtcttaagccttgatgtaaaaggcaatatgttcatctgggcattt
aaaggcataactgagaataattctccgtttggtcatatttcactcggaaacaagttcaca
ccaagctgcattatgcatccagatacttatctgaacaaggtaattgttggaagtcaggaa
ggttctctgcaactatggaatattagcacaaagaaaaaactttatgaattcaaaagctgg
agttcagccatatcctgttgtgtttcatctcctgccctagatgttgttgctgttggctgt
tctgatggaaagattcacgtccacaatatacgatatgatgaagaagtggttactttctct
caatctactagaggttcagtgactgctctatctttcagcactgatggacagccacttcta
gcatctggtggttcatctggtgtcataagcatatggaatcttgaaaagaggaggctccat
tctgttattggagaggcccatgattgctcaatagtttctcttcactttcttgcaaacgag
cctgtgttgatgagttcatcagctgacaactctataaaaatgtggatttttgacactagt
gatggggacgcccgtcttctacgatttagaagtgggcatagtgcacccccaaagtgtatc
agattctattctaatggacgacacatcctctcagcaggacaggatcgtgcctttcggctg
ttctctgtcatccaggatcaacagagcagagaactttctcaacgccatgtatcaaaaaga
gcaaaaaagctcaagctgaaggaaactgaaataaaactcaagcctgttatcgcatttgat
gttgctgaaatcagggaacgtgattggtgcaatgtggtcacatgtcatatggatactgct
caagcctttgtctggaggcttcaaaatttcgtgattggtgaacacatcctgtcaccatgc
ccacagaacccaacaccagttaaggcctgtgctatcagtgcatgtggcaattttgcagtt
gtagggactgcagccggttggattgagcgatttaacctgcagtcaggtattagtcgaggc
agttatgttgatatgtcagaaggcaggtcctgtgcccacaatggtgaagtggttggcgtg
tcttgtgattcaaccaatacagtcatgataagtgctggtttgaatggtgatgtaaaagtt
tggaattttaaaggacgtgaattgaagtccagatgggaaataggttgcccagttgtcaag
attgtctatcaccgttacaatggtcttctggctacagtggcagatgacttagttatccgc
ttatttgatgttgttgcactgaggatggttcgtaagtttgaaggtcacacggatcgtata
actgatgcatgctttagtgaggatgggaaatggctaatgacctccagcatggatgggact
ctaaggatttgggatgtaatcctagctagacaaatagatgctatacatgttgatgtgtct
gtgacagcgctgtctctttccccaaatatggatgtcttagctacgactcatgttgatcag
aatggtgtttacttgtgggtgaatcaggcaatgttttctgcccctagtaaatctggtgcc
catgggagtggcaaagatattgtgaacgtcaatctaccatccatctcaactgggaattcc
ttggattccaactctgaggaagctgacaagtcaagccctcaggaagtgccagatgttcct
ctctccacacctggacatgaacaaatacccgatcttgtcaccctctcaatgttgcctaag
agtcagtggcaaagcttgatcaatctagatatcataaaagctaggaacaaaccaattgag
ccaccaaaaaagccagaaaaggccccttttttcttgccatcaattccatccctgtctgga
gagattgtgttcaaaactagagaatctgctgaaggtgataaggattctcaagctggtgaa
acaaaaagcagaaagatcaaagctgacagtccggtatctgagttcttacaattccttcaa
cactctacagaggaaaaagatttcgcagcatttacagaatatatcaaaggtttatcatct
tcgactttggacatggaacttaggatgcttcagattgtagacgaggatgacagtgaccaa
gagtccagcaacagaccagaaattcatttcattggacttctgctagattattttacacaa
gaaatttcatgcagaaacaatttcgagtttatacaggctatgatccggttattcttaaag
atccacggtgaaagcgtacgctgccagcctattttacaggaaaaggcagagaagcttctt
cacattcaaaccgcagtatggcagaagatagataagttgtttcagagcacgaggtgtatg
gttacattcctcagcaactcacaattttga
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