Salvia splendens (scarlet sage): 121757043
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Entry
121757043 CDS
T07627
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03420
Nucleotide excision repair
sspl04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121757043
09124 Replication and repair
03420 Nucleotide excision repair
121757043
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sspl04121
]
121757043
03400 DNA repair and recombination proteins [BR:
sspl03400
]
121757043
Ubiquitin system [BR:
sspl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
121757043
DNA repair and recombination proteins [BR:
sspl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
121757043
TCR (transcription coupled repair) factors
Cul4-CSA complex
121757043
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
121757043
NCBI-ProteinID:
XP_042008449
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All DBs
Position
12:complement(2495963..2503608)
Genome browser
AA seq
1089 aa
AA seq
DB search
MSVWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLSPQGLQPMLDVPIYG
RIATLELFRPHGETQDLLFIATERYKFCVLQWDAETGEFITRAMGDVSDRIGRPTDNGQI
GIVDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCPKPTIVVL
YQDNKDARHMKTYEVNLKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYS
SASSFKAIPIRPSITRAYGRVDADGSRYLLGDHNGLLHLLVITHEKEKVSGLKIELLGET
SIASSISYLDNAVVFVGSSYGDSQLIKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLE
RQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSATDDPYDTFLVVS
FINETRILAMNIEDELEETEIEGFCSNVQTLFCHDAAYDQLVQVTSSTVRLVSATSRELH
NEWFAPEGYSINVATANVTQVLLATGGGHLIYLEIGDGVLREVKHTQLEYDISCLDINPI
GDNKNCSQLAAVGMWTDISVRIFSLPDLNLITKEHLGGEIIPRSVLLCAFEGISYLLCAL
GDGHLLNFVLTTSNGALSDRKKVSLGTQPITLRTFSSKNATHVFAASDRPTVIYSSNKKL
LYSNVNLKEVSYMCPFNTAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHARRICH
QEQTRTFAICSLKYNQSAADDSEMHFVRLLDDQTFDFISTYPLDQFECGCSVLSCSFSDD
SNVYYCVGTAYVMPEENEPTKGRVLIFIVEDGKLQLIAEKETKGAVYSLNAFNGKLLAAI
NQKIQLYKWMPRDYGSHELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEG
AIEERARDYNANWMSAVEILDDDIYLGAENNFNLFTVRKNSEGATDEERGRLEVVGEYHL
GEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYVFLEKLQTNMRKV
IKGVGGLSHEQWRSFYNEKKTVEAKSFLDGDLIESFLDLNRNRMEEISKSMNVAVDELMK
RVEELTRLH
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtatggaattacgtagtgacggcgcacaagcccaccaacgtcacgcattcgtgc
gtcggcaatttcactagcccgcaggagctcaatctcataattgcgaaatgcacccggatt
gagattcatttgctctcgcctcaaggcttgcagcctatgctggatgtgccgatatatggg
agaatcgccacacttgagctttttcgcccacatggagaaacacaagacctccttttcata
gctacagaaagatacaaattctgcgttttgcaatgggacgccgagactggcgagtttatc
acaagagccatgggtgatgtttctgatcggattggccgtcccactgataatggacagatt
ggaatagttgatccagactgcaggttgattggtctacatctatatgatgggttgttcaag
gtcattccatttgataacaaaggccaactcaaagaggcatttaatatcaggctggaggag
cttcaggttttagatatcaagtttttgtatggttgccctaagccgaccattgttgtactt
taccaggataacaaggatgcgcgtcatatgaaaacatacgaggttaatttgaaggataaa
gattttgttgaaggtccgtggtcacaaaacaatcttgacaatggggcagatttgttaatc
ccagtgccacctcctctttgtggtgtcctcattattggtgaagaaacaatagtatattcc
agtgcctcaagtttcaaagcaatcccaattagaccttctattacaagagcctatggaagg
gttgatgcagatggttcacgctacttattaggagatcacaatgggcttttgcatctactt
gttataactcatgagaaggagaaagtatctggactcaaaattgagctcttgggggaaact
tctattgcatcatccatatcatatcttgataatgctgttgtttttgttggctcaagttat
ggagattcacagcttataaagcttaatcttcaaccggacgcaaaaggttcttatgtggaa
gttcttgaaagatatgtgaatttggggccaattgttgatttctgtgtggttgacttggag
aggcaagggcaaggtcaagttgtaacttgctcaggtgcctacaaggatggttctttgcgc
attgtgcgaaatggtattggaataaatgaacaggcatctgtagagcttcaaggcatcaag
ggcatgtggtcgctgcgatcagctactgatgatccatatgatactttcttagtcgtcagc
tttatcaacgagacacgtattttggcaatgaatattgaagatgaattggaggaaactgag
attgaaggtttttgttccaatgtacagactttgttttgtcatgatgctgcatacgatcaa
cttgtgcaggttacttcaagtacagttagactagtcagtgctaccagcagagagcttcac
aatgaatggtttgctccggaaggttattcaatcaatgttgccactgccaatgtcactcaa
gttctattggctaccggcggaggacatttaatttatctagaaattggtgacggtgttctg
agagaagtgaaacatacccagttggagtatgacatctcatgcctggacattaatccaatt
ggtgataacaaaaactgcagtcaactagctgcggtgggaatgtggacagatattagtgtt
aggatattttcacttccagacttgaatcttataacaaaggagcatttgggaggggagatc
attcctcgatctgtacttctttgtgcttttgaagggatatcttatctgttatgtgctctt
ggggatggacatctcttgaattttgtgttgactaccagcaacggtgcactatcagacagg
aagaaagtttctttagggacccaaccaattacactacgtactttctcatcaaagaatgcc
acacatgtatttgcggcttctgatagaccgactgtcatctatagcagtaacaagaaattg
ctttacagcaatgtaaatctgaaagaagtcagttatatgtgccccttcaatacagctgct
ttccccgacagccttgctattgctaaagaaggcgaactaacaattggaaccatagatgat
attcaaaagcttcacatacgctcgatcccacttggggagcatgcacggcgtatatgtcat
caggaacaaacacggacttttgccatttgtagtttgaaatataaccaatcagcagcagat
gactctgaaatgcactttgtccgcttgttagatgaccagacattcgatttcatatctact
tatcctctggatcaattcgagtgtggttgttctgtccttagctgctcgttctctgatgac
agtaatgtgtactactgtgtggggactgcatacgtaatgccagaagaaaatgaacctact
aagggtcgggttttaatttttattgtagaagatggaaaactccaactaattgctgagaag
gaaaccaaaggtgctgtctattctcttaacgccttcaatgggaaactgcttgctgccatt
aatcaaaagattcagttgtacaagtggatgccacgagattatggctctcacgagttgcaa
tccgaatgtggacatcacggccacatacttgccctttatgttcaaactaggggggatttc
atcgtagttggtgatctgatgaaatcaatatctttgctgatttacaagcatgaggagggt
gctattgaggagcgagctcgtgactacaacgcaaattggatgtcagctgtcgagattctg
gacgacgatatttaccttggagctgagaataatttcaacctcttcaccgtccgtaaaaac
agtgaaggagcaactgacgaggagcgtgggcgcctcgaggtcgttggcgaataccacctt
ggcgaattcgtcaatcgattccggcatggttcactagtcatgcggctcccagattccgac
gttggccagatcccaacagtcatattcggcactgtcaatggagtcatcggggtcattgcc
tctctcccccacgagcagtacgtcttcttggaaaaactgcagacgaatatgcggaaagtg
atcaagggcgtcggggggctcagccacgagcagtggagatccttctacaatgagaagaaa
accgtcgaggcgaaaagctttctagatggagatctgatcgaatcgttccttgatctcaac
aggaataggatggaggagatttcgaagtcgatgaatgttgctgtggatgaacttatgaag
agagtggaagagctgactaggttgcattaa
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integrated database retrieval system
