Salvia splendens (scarlet sage): 121757190
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Entry
121757190 CDS
T07627
Name
(RefSeq) WD repeat-containing protein LWD1-like isoform X1
KO
K11805
DDB1- and CUL4-associated factor 7
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
121757190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sspl04121
]
121757190
03036 Chromosome and associated proteins [BR:
sspl03036
]
121757190
Ubiquitin system [BR:
sspl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
121757190
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.3/1.5)
121757190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
Beta-prop_THOC3
Beta-prop_WDR5
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_WDR3_1st
WD40_WDHD1_1st
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
Beta-prop_EIPR1
WD40_Gbeta
Beta-prop_Aladin
WDR55
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
Beta-prop_WDR41
Beta-prop_WDR3_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
121757190
NCBI-ProteinID:
XP_042008639
LinkDB
All DBs
Position
12:2732783..2734722
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AA seq
406 aa
AA seq
DB search
MGAISDPNQDGSDEQQLRSEIYTYEAPWHIYAMNWSVRRDKKYRLAISSLLEQYPNRVEI
VQLDDSTGEIRPDPALSFDHPYPPTKLIFVPDKDCQRPDLLASSSDFLRLWQISDSDSSR
RVELKSLLNNNRNSEFSGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEKEVVDTQLIAHD
KEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYM
ATIIMDSSKVVVLDIRFPTLPVVELQRHQAGVNAIAWAPHSSCHICTAGDDSQALIWDLS
SMGQPVEGGLDPILAYTAGAEIEQLQWSYSQPDWVAIAFSNKLQILRCYYYNAELVVASI
RFNTETIRAVSEGTSSQNLERRRYIRAYWLVVTTSVLPPVKPLLRA
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcaatcagcgacccgaaccaagacggctcggacgagcagcagctccgctcagaa
atctacacgtacgaagccccatggcacatctacgccatgaactggagcgtccgcagggac
aagaaataccgcctcgccatctccagcctcctcgagcagtaccctaaccgcgtcgaaatc
gtccagctcgacgactccaccggcgagatccgccccgaccccgccctctccttcgaccac
ccctaccctccgaccaagctcatcttcgtccccgacaaggactgccagcgccccgatctc
ctcgcctcctcctccgatttcctccgcctctggcaaatctccgattccgactcctcccgc
cgcgtcgagctcaagagcctcctcaacaacaaccgcaacagcgaattctccggtccgttg
acctcctttgactggaacgaagccgagccgcgccggattggaacctccagcatcgacacc
acctgcacgatttgggacatcgagaaggaggtggtggatacgcagctgatcgcgcacgat
aaggaggtctacgacatcgcgtggggcggcgttggcgttttcgcgtcggtttccgccgac
ggctcggttagggttttcgatctccgcgataaggagcattcgactataatttacgagagc
tccgagccggacacgccgctggtgcggcttgggtggaataagcaggatcctagatacatg
gctaccattataatggacagcagcaaggtcgtggtgttggatattcgcttcccgacgctg
ccggtggtggagctgcagcggcatcaggctggtgtgaatgcgattgcgtgggctccgcat
agctcctgccacatttgcacggcgggggatgattcgcaggctttgatttgggacctctcg
tcgatggggcagccggtggagggagggttggacccaattctggcttacactgccggggcg
gagattgagcagctgcagtggtcgtattcgcagcctgattgggtggcgattgcgttttcg
aacaagctacagattctgaggtgttattactataatgctgaacttgtggttgcttccatc
agatttaacacagagacaatcagagctgtgagtgaaggaacttcctcacagaatctcgaa
agacgtcgctacattagagcgtactggcttgtggtaactacatcagttcttccaccagtc
aagcccctgttgcgggcctga
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