Salvia splendens (scarlet sage): 121757395
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Entry
121757395 CDS
T07627
Name
(RefSeq) CCR4-NOT transcription complex subunit 9-like isoform X1
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121757395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121757395
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121757395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rcd1
Motif
Other DBs
NCBI-GeneID:
121757395
NCBI-ProteinID:
XP_042008881
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All DBs
Position
12:complement(6320830..6324926)
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AA seq
315 aa
AA seq
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MSSLHPSINYMKAAPFEVPATSSAAANNDRNVPSVEQLVLDLCNPDLRENALLELSKKRE
LFQDLAPLLWNSFGTLAALLQEIVSIYPVLSPPNLTPGQSNRVCNALALLQCVASHPDTR
MVFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKVDNTDVISFLLYTEIIPLC
LRTMEMGSELSKTVATFIVQKILLDDVGLEYICATAERFFAVAGILSNMIIALAEQPSAR
LLKHIIRCFLRLSENLRACEALKNCMPEMLKDGTFSSCLLEDVTTRRWLQQLLHNVLGHR
VAIQAGGGFDIVNHG
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagcttacatccgtcgatcaattacatgaaagccgctccgtttgaggttccagcc
acctcttccgccgctgctaacaatgaccggaatgttccatcagtcgaacagcttgttctt
gacctatgcaaccccgatctccgcgaaaacgctcttctcgaactctccaagaagagggag
ctgtttcaggatttggctccattgctatggaactcctttggtacacttgctgctcttcta
caggaaatagtttctatttacccagtgttatctccaccaaatctaactcctgggcagtca
aacagggtttgcaatgcactcgcccttcttcagtgtgtggcctcacatccagatacaaga
atggtgttcctcaaagctcacattcctctgtacctgtatccttttcttaataccaccagc
aaaactcgcccatttgagtacttgaggcttactagtctaggagtcattggtgctctggtg
aaggttgacaacactgacgttatcagtttccttctctatactgaaataattcccttgtgc
ttgcggacaatggaaatgggaagtgaactatcaaaaacagtagcaacatttattgtgcag
aaaattttgcttgatgacgtgggattggaatacatatgcgctacagcagagcgattcttt
gctgtagctgggattctgtcaaacatgattattgcacttgctgaacagccttctgctcga
ctgttaaagcacattatcaggtgctttcttcgtttgtctgaaaatctaagagcttgtgaa
gcactcaagaattgtatgcctgaaatgctcaaagatggaacatttagcagctgccttctt
gaagatgtaactacgagaaggtggttacaacaattgcttcataatgtgctagggcatcgg
gtagccattcaagcaggaggtggatttgatatcgtcaatcatggctag
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