Salvia splendens (scarlet sage): 121758222
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Entry
121758222 CDS
T07627
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121758222
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121758222
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121758222
mRNA degradation factors
5'-3' decay
Decapping complex
121758222
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_EML_2
Beta-prop_Vps41
CdiI
Motif
Other DBs
NCBI-GeneID:
121758222
NCBI-ProteinID:
XP_042009574
LinkDB
All DBs
Position
12:complement(4983843..4992810)
Genome browser
AA seq
1438 aa
AA seq
DB search
MASPGNPHAPGGGPFDMHKLFKPSTPPPQQQHPTSTPNSNPNPQSFPNNVSNANSNLNLV
SAPFPVPSASYPPPTGAGSGNYSYSPQTSPYHYHPVYTPYSNPPPPPHQEYANVHPQRSM
SYPTPPLQPQLQAPPNSQHQNNFQNPTNPHPQNPNNPGARLMALLSAPPSTMDVVPQQLS
MPMAQIHPTSSSGSEFSMPQNVNVLPSSGQGMVVSHHGPVMRMPSSKLPKGRHLIGSNVV
YDIDVRLPGEVQPQLEVTPITKYGSDPGLVLGRQIAVNKTYICYGLKLGAIRVLNINTAL
RSLLKGLAQRVTDMAFFAEDVHLLASASVDGRVYVWKITEGSDEEDKPQITGKIVTALQI
TGEGESLHPRVCWHCHKQEVLVVGIGRRVLKIDTTKVGKGEKYSAEEPLKCPIEKLIDGV
QLVGSHDGEVTDLSMCQWMTTRLVSASVDGTIKIWEDRKSSPIAVLRPHDGQPVKSVTFV
AAPHRPDHIILITGGPLNRELKIWVSASEEGWLLPSDAESWNCIQTLELRSSEGRLEEGF
FNQVAALSQAGLLLLANAKRNAIYAVHMEYGPNPAASCFDYIAEFTVTMPILSFTGTSEV
GPHGEQIVPVYCVQTQAIQQYALDLSQCLPPPTENVVYEKTDSSVSRDAASIEGIARMEP
SGSKPSEISISSTAPKASLHEGGLDNASTIRYAVGAASGESPAIQEFATSSMESKQVNLS
KAVNETDISLATSTQLPLSPRVSRSLSGFSRSSSIEHGPPVSEQKVIEYSVDRPMDSVHG
NLSDVASLDDDSQDDISAALNHPIKFKHPTHLVTPAEILMATSSSDVNHAIEPQSEGERN
IQDVVVSNDTRNVEVEVKVVGETRFSQSNDIEPREELETFVSENKEKNFCSQASDLGMGI
ARECRVLSPETYTVEEARQVSGTDRREADTQPSTTVEEGHDSAKDVTQKDTDSSTPLAAQ
PTAPTTKGKKQKGKSAQGSGLSSQSPSEFNSTDSTVEPGVSSSTPQAETGVSQMLSMQEM
LNQIVNMQNEMQKQMALMVTVPVTKEGKRLEAALGRSMEKAVKANSDALWARLQDENAKQ
EKAAKERMQQLMNTISNCLNKDLPAIIEKTVKRELTTIGQSVARTITPAIEKTISTSIIE
SFQKGVGDKAVNLLEKSVSSKLEALVARQIQVQFQTSGKQALQETLKSSLEGSVIPAFEM
SCRTMFEQVDTAFQKGMVEHTSVVQQQFEASHSPLALALRDAINSASSMTQTLSNELLDG
QRKLLAIAVSGANSKAPSLLSQLSNGPLGSLHEKVELPPDPTKELSRLIAERKYEEAFTA
ALQMSDVNIVSWLCSQVDLPGICSVNPLPLSQGVLLSLLQQLACDISNDTPRKLMWMREV
MTAINPTDPMIAVHVRPIFEQVYQILNHQRNLPTLGGAELANIRLIMHVINSMLMSSK
NT seq
4317 nt
NT seq
+upstream
nt +downstream
nt
atggcttcccctggcaatccccacgcaccaggcggaggtcccttcgatatgcacaaatta
ttcaagccctccacaccgccgcctcagcagcagcatcccacctccacccccaattccaac
cctaaccctcagagcttccccaacaacgtcagcaatgctaattccaaccttaatttggtc
tccgctcctttcccagtcccgtcggcatcgtatccgccgccaaccggcgccggaagtggg
aactactcctattccccccagacgtcgccgtaccattaccacccggtgtacaccccctac
tccaacccccctccgccgccgcatcaggagtatgctaatgtgcaccctcagagatcgatg
tcttatcccaccccgccgctccagccccagctgcaggcgccgcctaattcgcagcaccaa
aataattttcagaaccccacaaatccccatccccaaaaccctaataatccaggtgctcgt
ttgatggcgttgctgagtgcgccgccttctactatggatgttgttccgcagcagctgtca
atgccaatggctcaaatccaccccacttcctcatcgggctctgaattttctatgccgcag
aatgtgaacgtcttgccctcttctggccagggtatggttgtttcacatcatggcccggta
atgcggatgccaagtagtaagcttcccaaggggcggcatttgatcggaagtaatgttgtt
tacgacatagatgttagattgcctggagaagttcagcctcaacttgaggttacacccatc
acaaaatacggatcagatcctggacttgttttggggaggcaaatcgcggtcaataagact
tatatctgttacgggctgaaattgggggccatccgggtgctcaatattaacactgctttg
agatccttgcttaagggtctagcgcagagagtcacggacatggctttctttgctgaagat
gttcaccttttggctagtgcaagcgttgatgggcgggtttacgtgtggaaaataacagaa
ggttctgacgaagaagataagccacagattactggaaagatagttactgccttacaaatt
actggagagggggaatctctccatcctagagtttgttggcactgtcataaacaagaagtt
cttgtagtgggaatcggtaggcgcgttctgaagattgatactacaaaagttggaaaaggt
gaaaagtattcagcagaggaaccacttaaatgtccaattgaaaagttgattgatggcgtc
caacttgttggcagccatgatggagaagtgactgacttgtctatgtgccagtggatgacc
acccgcttggtatcggcttcagtggatggaacgataaagatttgggaggatcgcaagtca
tctccaattgcagttctcaggccacatgatggacaacctgtcaaatccgtgacctttgtg
gctgctcctcatcgcccagatcatatcatacttatcactgggggccccctgaatcgagaa
ttgaagatatgggtttcagcaagtgaagaagggtggttgcttcctagtgacgcagaatca
tggaattgtatccagacgttggaattgagaagttcagagggtcggctagaagaaggtttc
ttcaatcaagtagcagcattgtcacaagctggccttcttttattagcaaatgctaagaga
aatgctatttatgctgtgcacatggaatatggtcctaacccagcagcaagttgttttgat
tatatagcagaatttacagtcactatgccgatactcagttttacagggacaagcgaagta
ggacctcatggtgaacaaattgttccagtgtattgtgtccagacacaagctattcagcag
tatgctttagacttgtcacagtgtctgccaccccctacagagaatgtagtctatgagaag
acagactctagtgtctcacgggatgctgcaagtattgaagggattgctaggatggagcct
tctggcagtaaaccatcagagatttctatatctagcacagctcccaaagcaagcctgcat
gaaggtggcttagataatgcatcaaccattaggtatgcggttggtgctgcttccggtgag
tcaccagctatacaagagtttgctacctcaagtatggagtccaaacaagttaatttgtcc
aaagctgttaatgaaactgatatttctcttgccacttcaactcaactccctctgagtccc
agggtttctagatctctatctggttttagtcgatcaagcagcattgagcatggcccacca
gtttcggagcagaaagtgattgaatattcagtagatagaccaatggatagtgttcatgga
aacttgtctgatgttgcttcattggatgatgattctcaagatgatatttctgctgctctc
aatcatccaatcaagttcaaacaccccactcatttggtaactcctgctgagatattgatg
gccacttcatcctctgatgttaaccacgcaattgagccccaaagtgagggtgagcgtaat
attcaagatgtggtagttagcaatgatacaaggaatgttgaggtagaggtcaaagttgtt
ggcgaaacaagatttagtcaaagtaatgatattgagccccgagaagaacttgagactttt
gtgtcagagaataaggaaaaaaacttttgctctcaagcttctgatcttggaatgggaata
gctcgggaatgccgcgtcttgtctcctgaaacatacactgtggaggaagctaggcaggtt
agtgggacagatcgaagagaagcagatacccaaccctctaccacagtggaagaaggtcat
gactctgcaaaggatgtgactcagaaggataccgattcttcaacccctttggctgctcaa
ccaactgcaccaactacgaaagggaagaagcaaaagggaaagagtgctcaaggatcgggc
ctatcttcacaatctcctagtgagttcaattcaactgattctactgttgaaccaggtgtt
agctctagtactccccaggcagaaactggagtttcacaaatgctttccatgcaagaaatg
ctgaatcagattgtgaacatgcaaaatgaaatgcagaaacaaatggcactgatggttacc
gttccagttaccaaagaggggaaaagacttgaggcagccttgggaagaagcatggagaaa
gctgtcaaagccaattctgatgctttgtgggctcgtcttcaagatgaaaatgcaaaacag
gaaaaagcagctaaagagcgcatgcaacagctaatgaatacaatcagtaattgcttaaac
aaagacttacctgctatcatagagaaaactgtcaagagagaactgaccacgattgggcaa
tctgtggcacgcaccattacgccagccattgagaaaacaatttccacttccattatagag
agcttccagaaaggagtaggtgataaagctgtaaatctgttggaaaaatcagtgagctcc
aaacttgaagctttggttgctaggcaaatccaagttcaatttcaaacttctggcaaacaa
gctcttcaggaaaccctgaaatcgagcctggaaggttctgtaatccctgcatttgagatg
tcatgtaggaccatgtttgagcaggtcgatacagcatttcaaaaaggaatggttgaacat
acgtcagtggttcagcaacaatttgaggcatcacattctccattagcgcttgcactaagg
gatgctataaattcggcatcatcaatgactcaaactttgagcaacgagttgcttgatggt
caaagaaaattgttagctattgctgtatccggagcgaattctaaagctccgagtctattg
agtcaactaagtaatggtcctttgggttcacttcatgagaaggttgagcttccccctgac
ccgaccaaagagctatctagattaattgctgagcgcaagtatgaggaagctttcaccgct
gccctacagatgagtgatgttaatatagtatcttggctgtgctctcaggttgacttaccc
ggaatttgttcggtgaatccccttcctttgagccaaggtgtgcttctctctcttctacag
caattggcttgtgatataagcaatgacacacctcgtaagttaatgtggatgcgggaggtt
atgactgcaataaatccaactgacccgatgatcgcagtacatgtacgcccaatctttgag
caagtatatcaaatactaaaccaccaacgcaaccttccaacgttgggcggtgctgaactt
gccaacatccgcttaatcatgcatgtcatcaactccatgctcatgagctctaaatga
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