Salvia splendens (scarlet sage): 121758353
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Entry
121758353 CDS
T07627
Name
(RefSeq) coatomer subunit alpha-1-like isoform X1
KO
K05236
coatomer subunit alpha
Organism
sspl
Salvia splendens (scarlet sage)
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sspl04131
]
121758353
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sspl04147
]
121758353
Membrane trafficking [BR:
sspl04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
121758353
Exosome [BR:
sspl04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
121758353
Exosomal proteins of bladder cancer cells
121758353
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
TPR_COPA_B
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_DCAF4
Beta-prop_IFT122_1st
WD40_RFWD3
Beta-prop_SPT8
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Fis1_TPR_C
Motif
Other DBs
NCBI-GeneID:
121758353
NCBI-ProteinID:
XP_042009695
LinkDB
All DBs
Position
12:complement(28749951..28755686)
Genome browser
AA seq
1218 aa
AA seq
DB search
MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH
KSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIW
NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDILR
LSQMNADFFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKIWRMNDTKAWE
VDTLRGHMNNVSCVLFHARQDIIVSNSEDKSIRVWDATKRTGLQTFRREHDRFWILSAHP
DMNLLAAGHDSGMIVFKLERERPAFSVSGDSAFYVKDRFLRSFEYSTQKDTQLIPIRRPG
SNGLNQAPRTLSYSPTENAILACSDVDGGSYELYVIPKDSYGRGDTAQEAKRGAGGSAVF
VARNRFAVLEKSSNLVLVKNLKNEVVKKSVLPIATDAIYYAGTGNLLCRAEDKVVIFDLQ
QRIVLGDLQASFVRYVVWSQDMESVALLSKHSIVIADKKLVHRCTLHETIRVKSGSWDDN
GVFIYTTLTHIKYCLPNGDSGIIKTLDVPVYVTKIYGNTIFCLDRDGKNRPIIIDSTEYI
FKLSLLKKRYDHVMSMIKNSELCGQAMIAYLQQKGFPQVALYFVKDERTRFNLALESGNI
EKALESAKKIDEKDYWYRLGVEALRQGNAGIVEYAYQKTKNFERLSFHYLITGNLDKLSK
MMKIAEVKNDVMGQFHDALYLGDVRERVKILENAGHLPLACITASIHGLHDVVERLSANL
EDNVPSLPEGRKASLLIPPSPVLCAGDWPLLMVSKGIFEGSLDDAGKGAEEEYEEAADAD
WGESLDIGDVDNLQNGDINMALDVEDGHNENDEEGGWDLEDLDLPPDADTPKAASNARSS
VFVCPTPGMPVSQIWVQKSSLAAEHAAAGNFDTALRLLSRQLGICNFAPLKSQFIDLQLG
SHSYLRACTSAPGISIAVERGWSESASPNVRGPPALIFNFSQLDEKLKAGYKATTTGKFS
EALRHFLSILHTIPLVVVETRREVDEVKELVIVVKEYILGLQMELKRRELKDDPVRQQEL
AAYFTHCKLQPPHLRLALTSAMTVCFKARNLSTAANFARRLLESNPSNENQARQARQVLQ
AAERNMTDATQINYDFRNPFVVCGATYVPIYRGQRDVTCPYCTTHFVPSQQGQLCTVCDL
AAVGADASGLFCSPSQIR
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgttgacgaaattcgagaccaagagcaatcgagtgaaaggcttgagctttcacagcaag
cgtccatggatcctcgcaagtcttcacagcggcgtgatccagctctgggattaccgcatg
ggcaccctcatcgaccgattcgatgagcacgacggccccgttcgcggcgtccatttccac
aaatcgcagccgcttttcgtctccggaggtgatgattacaaaattaaggtgtggaattat
aaattgcatagatgcctatttactcttcttggccatcttgactatatccggactgtccaa
ttccatcatgagtatccttggatagtaagtgcgagtgatgatcagacaatcagaatatgg
aactggcaatcacgtacttgcatttctgtgttaacggggcacaaccactatgtcatgtgt
gcttcatttcaccccaaagaagacttggttgtttcagcctctttggatcagactgtccgt
gtttgggatattggtgccttgaggaagaaaacagtatctcctgctgatgacattctgcga
ttatctcaaatgaatgcagacttctttggtggtgttgatgctgttgtgaagtatgtactg
gaaggtcatgatcgaggggtcaactgggcttcttttcatccaactctccctctgattgtt
tccggagctgatgaccgccaagtaaagatctggcgcatgaatgatacaaaagcttgggag
gtggatacattgagaggtcatatgaataatgtttcctgtgtcctgttccatgcaaggcag
gacattattgtatcaaattcagaagataagagcatcagagtttgggatgctactaaaaga
actggcctgcaaacatttcgcagggagcatgacagattctggatcctctctgcccacccc
gatatgaatctactcgctgctggtcatgatagtggcatgattgtttttaagctagagaga
gagcgccctgccttttctgtcagtggtgactctgcgttttatgtcaaggatcggtttctg
cgctcttttgagtattccactcagaaagatacacaactgattccaatccgtcgtcctggt
tctaatggtttgaatcaagcgccacgaactctctcttacagtcctactgagaatgcgatt
ttggcttgctcagatgtggatggtggttcatatgagctctatgttatacccaaagatagc
tacggcagaggtgacacagctcaagaggcaaaaagaggtgcaggggggtcggctgttttt
gtggctcgaaataggtttgctgtgcttgagaagagcagcaacctagtcctggtcaagaac
ctaaaaaatgaagtagtgaaaaagagtgttctgcctattgctactgatgctatatattat
gctggtactgggaatctgctctgccgggccgaggacaaggttgtcatttttgatctccaa
caaagaattgttcttggagatcttcaagcctcttttgttaggtatgtggtttggtctcag
gatatggagagtgttgcgttactgagcaagcattcaattgttattgctgataaaaagctt
gtgcaccgctgcactcttcatgagaccattcgtgtcaagagcggatcatgggatgataat
ggtgttttcatctacactacactgacgcacattaagtactgcctgcctaatggggatagt
ggaattataaagaccttggatgttccagtgtatgtaacaaaaatatatgggaatacaatc
ttttgcctggaccgagatgggaaaaaccgtcctatcattattgattcaacagaatatatt
tttaagctgtccctgctgaagaagagatatgatcatgtaatgagcatgataaagaattca
gaactatgtggacaagccatgattgcatatttgcaacagaagggcttcccacaagttgct
ctctattttgtaaaggatgagagaactcgcttcaacttagcccttgaaagcggtaacatt
gagaaagccctagaatctgctaaaaaaattgacgagaaggattactggtacaggctagga
gtagaggctcttcggcagggaaatgcaggaattgttgaatatgcataccagaagacaaag
aactttgagaggctttcttttcattatctcataactggaaatctggacaagttgtcgaaa
atgatgaaaattgctgaggtgaaaaatgatgttatgggccaatttcatgatgcgttatat
cttggtgatgtgcgagagcgtgtgaaaattctggagaatgcgggtcacttgccccttgct
tgcataacagcttctattcatgggctccatgacgtagtggaacgtctgtctgcaaacctg
gaagataatgttccttctcttcctgaagggagaaaagcttctctgttgattcccccaagt
ccagtgctatgcgctggagattggcctttattaatggtgagtaaaggcatatttgagggt
tctcttgacgatgcaggtaaaggtgcagaagaagagtatgaagaggctgcagatgctgat
tggggtgagtctttggatattggtgatgtggataatctgcagaatggagacattaatatg
gcgctggatgtggaagatgggcacaatgagaatgatgaggagggaggatgggatcttgag
gatctagatctgcctcctgatgccgatacaccaaaggcggcttctaatgcccgttcttct
gtttttgtttgccccacacctggtatgcccgtaagccaaatttgggtccagaagtcatct
cttgctgctgaacatgcagctgctggaaactttgatacagcactgcgtttattgagccgt
cagttagggatatgcaatttcgcccctctaaagtcacagtttattgatctccagttgggc
agtcacagttatttgcgtgcctgtacgtccgcaccagggatatctattgcagtagagaga
ggctggagtgaatccgcgagccccaatgtgcgaggcccccctgctcttatcttcaatttc
tctcaactagatgagaagctgaaggctggttacaaagcaacgaccactggaaagttttcc
gaagctcttcgacatttcctgtcaattcttcacacaattccactggttgtggttgaaaca
agaagagaggtggatgaagtgaaggaattggttattgtagtaaaggaatatatcctcggc
ttgcaaatggagcttaagaggagggaactgaaggacgatccagttcgtcagcaggaactt
gcagcatatttcacccattgcaagctccagcccccgcacttgagacttgcgctgaccagt
gcaatgactgtttgcttcaaggcaagaaatctgagtactgcagccaactttgcaaggcgg
cttctggagagtaatccaagtaatgagaatcaagcaagacaggctcgccaggttctccag
gctgctgaaaggaatatgacggacgcaacacagatcaactacgatttcagaaatcccttt
gttgtgtgtggagcgacttatgttccaatctatcgggggcaaagagatgtgacctgcccc
tactgcaccacacattttgttccatctcagcaagggcagctatgcactgtttgtgatctt
gcggcagtaggagctgatgcatctggcttgttttgttccccttcgcagataagatga
DBGET
integrated database retrieval system
