Salvia splendens (scarlet sage): 121758371
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Entry
121758371 CDS
T07627
Name
(RefSeq) uncharacterized protein LOC121758371 isoform X1
KO
K06100
symplekin
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121758371
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspl03021
]
121758371
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121758371
Transcription machinery [BR:
sspl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121758371
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
121758371
U7-dependent histone pre-mRNA processing factors
121758371
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
CRM1_C
Motif
Other DBs
NCBI-GeneID:
121758371
NCBI-ProteinID:
XP_042009714
LinkDB
All DBs
Position
12:32744591..32760229
Genome browser
AA seq
1354 aa
AA seq
DB search
MAAALARDQALSLLAAANNHGDLAVKLSSLKQAKDILFSIEPSQAAELFPYLAELQSSPE
TQVRKYLLEVIDEVGAKPSEHLCILFPVLLTFLKDNNPIVVKQSIITGTKILSCVLEELA
LQHQRRDIVGRWLEELWTGLIKFRDTVLAIIFEAGPIAPKLLGIKFLETFILCFTLDSTE
FEMCNPEVMVRQGRMFNISWIAESHPILNPPALMSDANKYLGIFLEILLSASNLPGCVTI
TTVNSLVAIARKRPVYYKTVLKALLDFSPSVEMAKGRHTVSIQFSLRTAFLGFLRCTHPF
MTESREKLLKELRAMNAGDAADQVIRQIDKITRNNERASRDLQVNKDDQLSNQLHIAGDS
TKKRTTQIDHEDQNNIYDASLKRLRHGPHSNTNAAADTNDARQDHVNGISAKPPVLDGGL
TPVEQMIAMIGALIAEGERGVESLEILISNIHADLLADIVITNMKHLPKNPPPLTKYGNL
SSKHRSDTSDPTHVVASNGLATSTQTLDHSAQLPASSLSTTSFAVSDTFASANLSTDSKR
DPRRDPRRLDPRRLVVPVDVPPTSVLEDNVVQFPTVQSDFDPVSSSSALISVPQSVPESA
PQPLMPTIQTDINLPDSPMTIEVDESIQNDEVLDFDANAITPDKDADYSVHMSPSFSKAE
DIVSHASMDVAMLDEAYSPSSEESDEPLPDISNAEASESGSAELPVLPLYIELDEDHQTH
VKRLALERIINKYQNSHRTDIKQTQIAVVARLFAQIDVSDVIGMVPKLIISDYEQQKGHE
LVLHILYHLHSLVISDSASSAAAVYDNFLLAVAKSLLVDLPASNKSFSRLLGEVPCIPDS
ILGMLDDMCTKSYSGTDGRDGDRVTQGLGAVWSLILSRPLIRQACLDIALKCTVHPKDDI
QAKAIRLVSNKLYAVSFISDSIEQFAKNMFFSAVDQHSSDSLLSASANSDRRIGGQVGSA
ETSTSGSQVSEPGISPNETMKGVQDAPLDDSSNIFSQAHRLMSLFFALCAKKPILLQLVF
DSYVRASKAVKQAVHRHINVLMRALGSSYSELLHIISNPPQGSEDLLTQVLHLLSEGRVP
PTDLVVTVKHLYETRLKDASILIPIISAFSRDEVLRLPYFPNFSSINEIVYFFMCFQVLP
IFPRLVQLPLPKFQMALAHILQGSAHTGPALTPVEVLVAIHDISPERDCLPLKKITDTCS
ACFEQRTVFTQQVLAKALNQMVDRTPLPLLFMRTVIQAIDAFPTLVDFVMEILSKLVNKQ
VWRMPKLWVGFLKCISQTQPHSFNVLLQMPSPQLECALSKYPNLRGPLTAFTNQSSIKTS
VPRTNLLLLGLASEPHMQQPHAVSYLQASDGPAH
NT seq
4065 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgccctggcgagggaccaggcgctttccctgctagccgccgccaacaaccat
ggcgatttggccgtcaagctgtcttcattgaagcaggccaaagacatcttgttttctatt
gagccgtcgcaggcggcggagcttttcccttacttggccgagcttcagtcttcccccgaa
acgcaagtcaggaaatatctccttgaggtaattgatgaggttggggccaaaccaagcgaa
catctttgcatattatttcccgtcttattgacatttttgaaagataataatcccattgtt
gtaaagcaatctattatcactggcacaaaaattctctcttgcgtgctggaagagttggct
ttacagcatcaacggcgtgatatagttgggagatggcttgaagagctttggacagggctg
atcaaatttagggatactgttttggccattatctttgaggcggggcctattgctccaaag
ttgttagggataaagtttctcgaaacatttattttatgcttcacattggattcaactgag
tttgaaatgtgcaaccctgaagtaatggtgaggcaaggtaggatgtttaacatctcatgg
atagcggagagtcatcctattctgaatcctcctgccctcatgtctgacgcaaataaatat
ctagggatctttttggaaattttgctgtcagctagtaatttgcctggttgcgtgacaatt
actactgttaatagtcttgtagctattgcaaggaaaaggcctgtctactacaaaactgtc
ttgaaggcattgcttgattttagtccaagtgtagagatggctaaaggccgccacacagtc
agcattcagttttctctgagaactgcatttctagggtttttaaggtgtacacatcctttc
atgaccgagtcaagagagaaattgcttaaagagttaagagcaatgaatgctggagatgct
gctgatcaagttatccgccaaatagataaaatcacgaggaacaatgaacgtgcttcacgt
gatcttcaggtcaataaggatgatcagctgtcaaatcagttgcatattgcaggggattcg
actaagaaaaggaccactcaaatcgaccatgaggatcagaataatatttatgatgcctct
ttgaagaggctgcgtcatggtcctcatagcaatacaaatgccgcagcggatactaatgat
gctaggcaggatcatgttaatggcatatctgctaagccccctgtgttggatggtggtcta
actcctgtggagcagatgattgctatgattggcgctttaattgccgaaggagaaagagga
gtggagtctctggaaattcttatatccaatatccatgccgatctacttgctgatatagtc
atcacaaatatgaagcacttgcccaagaatccacctcctttgacaaaatatggtaacttg
tcttcgaaacatcgtagtgacacaagcgatcctacccatgtagttgcatcgaatggtttg
gcaacttctacgcagacgttagaccattcggctcaattacctgcttcatcattgagcacg
actagctttgctgtttcagatacatttgcttctgctaatctatctacagattctaaacgt
gatccacgaagggatcctcgtcgtcttgatccaagacggttggtggttcctgttgatgtg
cctccaacatctgttttggaagataatgttgtccaatttccaactgtacagtctgatttc
gaccctgtcagctcctccagcgcactcatatcggtacctcaatctgttcctgaaagtgct
cctcagcctctgatgcccacaattcaaactgacataaatcttccagactccccaatgaca
attgaagtggacgagtctatccagaacgatgaagtccttgattttgatgccaacgcaatc
actccagataaggatgcagattattctgtacatatgtcaccatcttttagcaaagctgag
gacattgtttctcatgcatcaatggatgtagccatgcttgatgaggcctactcaccttca
tcagaagaatctgatgaaccactgccagatatttcaaatgctgaagcatctgagagtgga
tctgctgagttgccagtgcttcccttgtacattgagctggatgaagatcatcaaacacat
gtcaaaagactggcacttgaacggataattaacaagtaccagaattcacacagaacagat
attaaacaaacacaaattgcagtggtcgcccgactgttcgcacagattgatgttagtgat
gtgattgggatggtgccgaaactgattatatcagattatgaacagcaaaagggtcacgag
cttgtgttgcatatcctataccatctccatagtcttgttatctcagactctgcatcatct
gctgctgctgtatatgacaatttccttctggcagtggcaaaatctttgctagttgatcta
ccagcatctaacaagtcttttagccgacttctcggtgaagttccctgcatacctgattcc
atattggggatgctggatgacatgtgtaccaaaagttattctggaactgatggccgtgat
ggtgatcgtgtcactcagggccttggagcagtgtggagcttaattcttagtcgccctctc
attcgccaagcatgtctagatatagctttgaagtgtactgtgcacccaaaggacgatatc
caggctaaagccatacgcctggtgtcaaacaaactctatgcagttagctttatttctgac
agcatcgagcagtttgcaaagaacatgttcttctcagctgtagatcagcattcttcagat
tcattactatcagcgtctgcaaattctgacagaagaattggaggacaggtaggaagtgca
gaaacatccactagtggctctcaagtttctgagcctgggatttctccaaatgagactatg
aaaggggttcaggatgcacccctagatgattcatcaaatatattttctcaagctcacagg
ctaatgtccttgttttttgcactctgtgctaagaaacctattcttcttcaactggttttt
gacagttatgtccgtgcttcgaaggcagttaagcaggctgtccatcgtcatataaacgtc
ttgatgagggctctggggtcatcgtattcagaattacttcatataatatcaaatccaccc
caaggaagtgaagatttgttgacacaggttcttcatttgttatccgaagggcgagtacca
cctacagatttggtggtgactgttaaacatttatatgaaactaggctgaaggatgcttct
attcttattcctatcatatctgctttttctagagatgaggtgctccgtctaccctatttt
ccaaatttcagttctataaatgaaatcgtttatttttttatgtgtttccaggttttacct
attttccctcggctggtccagcttcctctacccaagtttcagatggcactggctcatata
ttacagggctctgctcatacaggtcctgcattaacacctgttgaagtcttggtggcaatc
catgacatttctcctgagagagattgtcttccactgaaaaagatcacggatacttgctca
gcttgttttgagcagcgcacggtttttacacagcaagtcctggctaaggccttaaaccag
atggttgaccgaactccacttccactgctcttcatgagaactgtaatccaagcaattgat
gcttttccgacactggttgattttgtcatggaaatcttgtctaaactcgtcaacaagcag
gtttggagaatgccaaaactatgggttggcttcttgaaatgtatctctcaaacacagcca
cattccttcaacgtattgctccagatgccgtctcctcagcttgaatgcgctctaagcaag
tatccgaatcttcgtggtccacttactgctttcacaaaccagtcaagtattaaaacctct
gtgcctaggacaaacctattgcttcttggccttgcctctgaaccacacatgcagcaacca
cacgctgtttcgtatctgcaggcctccgatggcccggcacattaa
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