Salvia splendens (scarlet sage): 121758656
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Entry
121758656 CDS
T07627
Name
(RefSeq) nuclear pore complex protein NUP98A-like isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121758656
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121758656
03036 Chromosome and associated proteins [BR:
sspl03036
]
121758656
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121758656
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
121758656
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup98_GLEBS
Nucleoporin2
Motif
Other DBs
NCBI-GeneID:
121758656
NCBI-ProteinID:
XP_042009967
LinkDB
All DBs
Position
12:27373435..27381884
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AA seq
1022 aa
AA seq
DB search
MISPNHLGFNISTKPWGVTGIECRGSREALYSETPVDVINSGHSSGKIISISAMPHYQNK
SHEVLRFEDYKLKKGSREAPYSETSGDVINNGHSFGKMISISAMHHYQNKSHEELRFQDY
ELKKGFNISTKPWDVTGTECRGSREAPYSETPADAINSGHSSGKIISISAMPHYQNKSHE
ELRFQDYELHKGFNISAECRGSRESPYSETPGDGINSGHSPGKVISISAMPHYQNKSHEE
LRFQDYELHKGFNISTKPWGVTGTERRRSREAPYSETPGDGIDKGHSSGKIISISAMPHY
QNKSHEELRSQDYELHKGFNISTKPWGVTEIECRGSREAPYSETPADAINKGHSSGKIIS
ILGMPCYQNRSHEELRLEDSELQKGIAGRGSREAPYSETPEGDGINRWCSPGEIVSISAM
PHYQNRSHEELRFEDSELQKGFFHISTKPWAVTGIECRGSGEVPYSKTPEGDGINTGNSE
LQKGSSFPWQYPFKQSSCVSHPLTSPVPSSQSSFDSLWGTTFGTSTAAYAKPTFGSTSTG
FDPFPFGGSSAVGSVGRDPRTCAFGTSSTNMFSATNNSTLGLLITSSTISDTSNNSVLNA
FGFGHGSSSDSESSSIFGSQSSSAGSIVTTETKYEGSRQEFSATEVVPRENERDVSKFQS
ISAMPIYEHKSHEELRSEDYGLCNACYKEPSIISSSFMKSTPVTSSDPCSSFANASQPQQ
TAEKVGPISTNDLNTPSQASSGLPIVTEFTSQNINGPQYTPSSNSLVQSVTSILHGTPTQ
EPNGRSSETKLQVKFCVDEEANGSVAPLLPRKKPRAWVNITSPSLYTAQGSKGDEVKESC
SCVQIMEINEDMHALLNQHEVEVAATTEYVLALLPKLPDGVEYYTEPSLRKLAAKEIAEA
GFCRRVKDFVVGRKGHGSIKFLGETDVCHLDVESIVQLNNRQVIVYPNGRKKPRDGGQGN
KTAEVSLLNVKCISKKTGKKYVEGHPVESYKEMLVKMIRERGAEFDSYDPVEGELKFRVK
LF
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atgatttcgcccaatcatcttgggttcaatatatcaacaaaaccttggggtgttactgga
atagaatgtcgaggaagtagagaagcactgtattctgaaacacccgttgatgtaatcaat
agtgggcactcctctggaaaaatcatatcaatatcagcaatgcctcattatcaaaacaaa
agtcatgaagtgttgaggtttgaggactataagctaaaaaagggaagtagagaagcaccg
tattctgaaacctcaggtgatgtaatcaataatggtcactcatttggaaaaatgatatca
atatcagcaatgcaccattaccaaaacaaaagtcatgaagagttgaggtttcaggactat
gagctaaaaaagggattcaacatatcaacaaaaccttgggatgttactggaacagaatgt
cgaggaagtagagaagcaccgtattctgaaacaccagctgatgcaatcaatagtgggcat
tcctctggaaaaatcatatcaatatcagcaatgcctcattaccaaaacaaaagtcacgaa
gagttgaggtttcaggactatgagttgcacaaggggttcaacatatcagcagaatgtcga
ggaagtagagaatcaccatattctgaaacaccaggtgatggaatcaatagtgggcactcc
cctggaaaagtcatatcaatatcagcaatgcctcattaccaaaacaaaagtcatgaagag
ttgaggtttcaggactatgagctgcacaagggattcaacatatcaacaaaaccttggggt
gttactggaacagaacgtcgacgaagtagagaagcaccatattctgaaacaccaggtgat
ggaatcgataaggggcactcctctggaaaaatcatatcaatatcagcaatgcctcattac
caaaacaaaagtcatgaagagttgaggtctcaggactatgagctgcacaagggattcaac
atatcaacaaaaccttggggtgttactgaaatagaatgtcgaggaagtagagaagcaccg
tattctgaaacaccagctgatgcaatcaataaggggcactcctctggaaaaatcatatca
atattaggaatgccttgttaccaaaacagaagtcatgaagagttgaggttagaggactcc
gagctgcaaaagggaatagcaggtcgaggaagtagagaagcaccgtattctgaaacacca
gaaggtgatggaatcaataggtggtgctcccctggagaaatcgtatcaatatcagcaatg
ccccattaccaaaacagaagtcatgaagagttgaggtttgaggactctgaactacaaaag
gggttcttccatatctctacaaaaccttgggctgttactggaatagaatgtcgaggaagt
ggagaagtaccatattctaaaacaccagaaggtgatggaatcaacactgggaactctgag
ctacaaaagggatctagtttcccttggcagtatccatttaaacaatcaagctgtgtttct
catcctctcacttctcctgtgccatcaagtcagtcatcttttgattctctttggggaacg
acatttggtacatcaactgctgcatatgcgaaaccaacatttggcagcacaagcacgggt
tttgatccttttccatttggtggttcaagcgctgttggatctgttggtcgagatccaaga
acttgtgctttcggaacatctagcaccaacatgttcagtgccacaaacaactcgacactt
ggtcttctcattacatcgtcaactatatctgacacttccaacaattctgtgttaaatgct
tttgggttcggtcatggttcgtcttctgattctgaaagcagcagtatatttggaagtcag
agttcttctgcaggatccattgtcacaactgaaactaaatatgaaggaagtaggcaagaa
ttttctgcaacagaggtagttccaagagaaaatgaaagagatgtttcaaaatttcagtcc
atttctgcaatgccaatttacgaacataaaagtcacgaggagttgaggtcagaggattat
ggactatgtaatgcatgttataaagaaccttcgatcatctcctcatcattcatgaagtct
accccagtaacatcgtcagatccttgctcttctttcgcgaatgcatcacagcctcaacag
actgctgaaaaagtaggacccatttcaactaatgacctgaatacaccatctcaagcttca
agtggcctgccaatagtgaccgagtttaccagtcaaaacatcaatggaccacagtacact
ccttcaagcaattcacttgtgcagtctgtgacatcaatacttcatggaacacccactcag
gagcctaatggtagaagcagtgagactaagttgcaggtgaagttttgcgttgatgaagaa
gctaatggttcagtagcccctttgctgccacggaagaagcccagagcttgggtcaatatc
acctcaccgtctctttatacggctcaaggcagcaaaggtgatgaggtcaaagagagttgt
agttgtgtacaaattatggaaataaatgaagacatgcatgccctactgaatcagcacgaa
gttgaagtcgctgcaacaactgaatatgttttagcactactgccaaagcttcccgatgga
gttgaatattacacagaaccttcactgcgcaagctggcagctaaggaaatagcagaagca
ggattctgcaggcgtgtgaaggactttgttgtgggaaggaagggtcatggaagcatcaag
tttcttggagaaacagatgtctgccatctcgatgttgaatccattgtgcagttgaacaat
cggcaagtgatcgtttatccgaacgggagaaagaagccacgagatgggggacagggtaac
aagacagctgaggtcagtctgctcaatgtcaaatgcatcagcaaaaagacaggaaagaag
tatgttgaagggcatccagttgagagttacaaagagatgttggtcaaaatgattcgagaa
cgtggagcggagtttgattcatatgatccagttgaaggggaactgaaatttagggttaaa
ctcttttag
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