Salvia splendens (scarlet sage): 121758787
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Entry
121758787 CDS
T07627
Name
(RefSeq) serine/arginine-rich splicing factor SR45-like isoform X1
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03013
Nucleocytoplasmic transport
sspl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121758787
03015 mRNA surveillance pathway
121758787
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121758787
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121758787
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Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
DUF2457
RRM_ACIN1
YHR127W_C
Motif
Other DBs
NCBI-GeneID:
121758787
NCBI-ProteinID:
XP_042010116
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All DBs
Position
12:4572509..4578432
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AA seq
418 aa
AA seq
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MAKPARGRPASPSGSDSRSSSRSRSRSRSYSGSGSRSSSRSLSRSRSKSISSSSSLSRSG
RSRSPPPRKSPAEGARRGRSPPPQTKKSSPPPRKASPAPESLVLHVDQLSRNVNENHLKE
IFGNFGEVVHVRLAMDHVVNLPKGFAYVEFKIRADAEKAQLYMDGAQIDGKVVRAKFTLP
ERKKVASPPKTVATTSRRDASKAEDTAADGDRDGEKHPRDVSPRRKPLSPPRRRSPGPRR
GSPGPRRGSPRRGQDSPPPPRRRADSPYRRGDSPPIRRRPPLSPARGRSPSPPRRFRSPP
RSSPRRIRGSPVRRRSPPPPRRRSPRRLRSPPRRSPVGRRRSRSPIRRPARSPSRSPSPR
RGRVPPSRRGRSYSSSPSPPRRGPRRVSRSRSPRRPIRGRNNSSSSSTSTSSSPPPKP
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atggccaaacccgcccgcggccgcccggcgtcgccgtcgggatcagattctcgctcttcc
tcccgctcccgctcccgctcgcgctcttactccggctcaggctcccgctcctcttccagg
tccctctctcgctcccgctctaaatccatatcctcctcctcttctctttcacgtagcggc
agatcccgtagccctccgccgcggaaaagtcctgctgaaggggcgaggagaggtcgctca
cctccaccacaaactaagaaatcttccccacctccaaggaaagcttcacctgctcctgaa
tctcttgtgctgcatgtggaccagctcagtaggaatgttaacgaaaaccacttgaaagaa
atattcggtaattttggtgaagtggtgcatgtacggctggcaatggatcatgttgttaac
cttccaaaaggatttgcatatgttgagttcaagattagggcagatgctgaaaaggcccag
ttgtatatggatggtgctcaaattgatggtaaagttgttcgggcgaagtttacattacct
gagagaaagaaggttgcgtctcctcccaaaactgttgcaaccacatcaaggagagatgcc
tcgaaagctgaggacactgctgcggatggtgatagagatggtgaaaaacacccaagagat
gtttctcctcgtcggaagccactctctccacctcgaaggagatctcctggaccaagaaga
ggatctcctggaccacgaaggggatctcctagacgaggtcaagattctccacccccacct
cgccgtagagctgattctccttaccgccgaggtgactcccctccaattaggagaaggcct
ccactatctcctgccagaggccgttcaccttctcctccgaggcgcttcaggtcaccgcca
aggtcatctccaagaagaatacgtggtagtcctgttcgtcggcgatctcctcctccacct
aggcggcgttcaccaagacgtctccgaagtcctccaagaagatctcctgttggtcgcaga
cgtagtcgctctcctattaggaggcctgctcgttcgccatcacgatcaccctctcctaga
agaggtcgagtgccgccttctagacgtgggaggtcctattcttcatcgcctagtccacca
cgcaggggacctcgtagggtatcacggagccgtagccctcgaaggcctattagagggagg
aataacagcagcagcagcagcaccagcaccagcagctctcccccacctaagccatga
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