Salvia splendens (scarlet sage): 121758847
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Entry
121758847 CDS
T07627
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121758847
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspl03021
]
121758847
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121758847
Transcription machinery [BR:
sspl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121758847
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
121758847
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Ogr_Delta
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
121758847
NCBI-ProteinID:
XP_042010190
LinkDB
All DBs
Position
12:32984768..32991412
Genome browser
AA seq
960 aa
AA seq
DB search
MDRSSRFQNPVPLSSGGFSKPPPIQNDGAGMKPLLLDRFRAMVKEREDELRVFGGAAGLA
LGTDEIVRIYEIVLSELTINSKPIITDLTIIAGEQRVHGEGIAGAICSRIIEASVEHKLP
SLYLLDSIVKNIGKEYIRFFSARLPEVFCEAYTQVHPNMHQAMRHLFGTWSTVFPLSVLQ
KIETHLQFSPPVNGQSSGLSSSRASESPRPTHGIHINPKYLEAQRQFGQSSVDHFATEGV
SSTSRAGLTTSGLDAVKKSIPSASRITRSSPPYGLGPGGSLSPAGPSLEEFGMDSSTKRL
AVRQSPSRPGTDYGPSKVMNREEEPSEWRKRTLQGNLKPQHKAAAATAASVYKYGGGIDL
RGPRALISAYGMDEREKNNKHHKADELDSNGAEQKIGIRTWQNTEEEEFDWEGMTPSLAD
RKHSSDTYSSLPPLCNLTGRQSIVANHASRLSTRGSVNNVAGVLPNVAGASDLTSHIPPN
FGRESLILPPQQSQNQFNAKGGGSLAESRGFLTGGEQRSQVGNFSNIDWKCGGPAGVVST
FSSTYDSLAPEIQSGDVAVRKTWNPANFQNSQVLPSHSSLPQQMQFRGQFGMKNGSSITD
QVHSEPGSSRSMPQLNLSQISSIRPGMVPMNLHGAAPPNFSMVRESRQNIHLPYSVPSSS
NTMAPPLNYGYLAHGQGPAATTPHNLVPGMQSSLPILNGPNMSFQVPMATLQPPPRGPHP
GTTQAYPIGQNNGQVAPNASAGNGLSGLISSLMVQGLISLPKQDSVGVEFDQDSLKVRHE
SAITALYADLPRQCRTCGHRFKDQEEHSKHMDWHVNKNRTLKNRKTKPSPKWFVSVNMWL
SGTEALGTESAPGFLPVENTVETEEDEEMSVPADDSQKACALCGEPFDDYYSDEMEEWMY
RGAVYMHAPGGLTVGMDTTQLGPIVHAKCRSDSHGVSSEDYKKDEMESTEEGSKRKKPRC
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atggaccggagttcgagattccagaaccccgtgcctctgagcagcgggggtttcagcaag
cctccgccaatccagaacgacggcgcagggatgaagccgctgcttctcgatagatttagg
gccatggtgaaggagcgggaggatgaacttagggtttttggtggtgctgctggtttggcg
ttgggaactgacgaaattgtccggatttatgagattgttttgtcggagctcactatcaat
tcgaagcctatcatcactgatctcactataattgctggagagcagcgggtgcacggcgag
ggcattgctggtgccatttgttcccggattattgaggcttctgttgaacataaactgcct
tctttgtaccttttggatagcattgtgaagaacataggcaaggaatacattagattcttt
tctgctcgcttgcctgaggttttctgtgaggcttacacacaagtccaccccaatatgcac
caagcaatgcgccatctttttggtacatggtcaacagtattcccactgtcagtgcttcaa
aagattgagacacatttgcagttttctcctcctgtgaatggccagtcttctggattaagc
tcttcaagagcttctgaatctcctcgacctacacatgggatacacataaacccaaagtat
ttggaagcacaacgtcagtttggacaatcatcagtagatcattttgcaactgaaggagtg
agctcaactagtcgtgcaggccttacaacttctggtttagatgctgtgaaaaagtctatt
ccatcagcttctaggataacaaggtcctcccctccttatggacttgggcctgggggatca
ttgtcacctgctggtccttcacttgaggagtttggtatggatagttccacaaagagactc
gccgttaggcagtcaccatctcgtcctggaactgattatgggccaagcaaagtgatgaac
agagaggaggagccgagtgagtggcggaaaagaactttgcagggaaatctcaaaccacag
cataaagcagcagcagcaacagcagcttcagtgtacaaatatggtggtggtattgatctt
agaggaccgagagcattgattagtgcctatgggatggatgaacgtgaaaaaaacaataaa
catcataaagcagatgagttggattcaaatggtgctgagcaaaagataggtatcaggaca
tggcaaaacactgaagaggaggaatttgattgggaaggcatgaccccatctttagcagat
cggaagcactctagtgatacttattcatctcttccacctctatgtaacttgactggaaga
cagagcattgttgcaaaccatgcttcacgtttgtctactcgtggatctgtaaacaatgtt
gctggagttcttccaaatgttgctggcgccagtgatttgacaagccatattcctcctaat
tttggccgagaatctctgattttgccgccacagcagtctcagaaccaatttaatgccaaa
ggaggcggttctctagctgaaagtagaggctttttaactggtggtgagcaaaggagccaa
gttggaaatttctcaaatattgattggaagtgtggtgggcctgctggtgttgtttccaca
tttagttccacctacgactcactagctcctgaaattcaatcaggtgatgttgctgtaaga
aaaacatggaatcctgcaaattttcaaaactcacaggttttgccatcacactcgagtctt
cctcagcaaatgcagtttagaggccaatttggtatgaagaatggttccagtattaccgac
caagttcattctgagcctggtagcagtagaagcatgccacagttgaacttgtcccaaatt
tctagtattcgtccaggaatggttcctatgaatttgcatggtgcagcaccgccaaacttt
tcaatggttcgagagtcccggcaaaatatacacttgccttattcagtgcccagttcatca
aatacaatggcaccacctttaaactatggatacttagctcatgggcagggtcctgctgcc
actactccacataatttagttccgggcatgcaatcctccttgccaatcctaaatggccca
aatatgtcatttcaagtacccatggcaactttacagcctccaccgaggggtcctcatcca
ggaacaacccaggcatatcctattggtcaaaataatgggcaagttgctcctaatgcctct
gcagggaatggactttcagggttaatttcttctttaatggtccaaggtttaatatcttta
ccaaagcaggattctgtcggagtggagttcgatcaagacagtcttaaggttcgtcatgaa
agtgcaattacggctttatatgctgatcttccaaggcaatgcagaacatgtggccatcga
tttaaagaccaagaagagcacagcaagcatatggattggcatgtaaacaagaaccgaact
ctaaaaaaccgcaagacaaaaccttctccaaagtggtttgtgagtgttaacatgtggctc
agtggcacagaagccttgggaaccgaatcagctccaggtttcttgcccgttgagaatact
gtggaaacggaggaggatgaagaaatgtctgttcctgctgatgatagccagaaggcttgc
gcgttatgtggggagccctttgacgattactatagtgatgagatggaagaatggatgtat
agaggagccgtatacatgcatgcaccaggtggattaacagttggaatggacacaacgcag
ttaggtcctatagtgcatgctaaatgtaggtccgactcacatggggtttcatcggaagac
tataagaaggatgaaatggaatcaaccgaagaaggcagtaaaaggaaaaaaccacggtgt
tag
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integrated database retrieval system
