Salvia splendens (scarlet sage): 121759040
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Entry
121759040 CDS
T07627
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121759040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121759040
03041 Spliceosome [BR:
sspl03041
]
121759040
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
121759040
Spliceosome [BR:
sspl03041
]
Complex B
Other components
Prp19-related factors
121759040
Complex C
121759040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
Mad3_BUB1_I
TPR_19
UTP6_C
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
121759040
NCBI-ProteinID:
XP_042010467
LinkDB
All DBs
Position
12:3856817..3861893
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AA seq
909 aa
AA seq
DB search
MSIAQDLYPTEEDYLYEEEVLRNPNNLKLWWRYLIAKSDAPFKKRAIIYERALKALPGSY
KLWHAYLRERLEIVRNLPITHSQYQTLNNTFERALATMHKMPRIWTMFLQSLTHQKLITR
TRRTFDRALCALPVTQHDRIWECYLVFVSQRGVPIDTSLRVYKRYLKYDPSHIEDFIEFL
VNSQLWQEAAERLAGVLNDDQFYSIKGKTKHRLWLELCDLLTQHATEISGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRQLLEKARDVFEEGMTTVVTVRDFSVIFDAYSQFEDSVL
SIKMDNMDDSDEEDGNEDDIEEDDEEDDRLDIEKLRKRISCFWLKDDKDVDLRLARYEHL
MDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTVDPMKAVGKPHTL
WVAFAKLYETHGDVSNARVIFDKAVQVNYKAVDHLASIWCEWAEMELRHKNLKGALELMR
RATAEPSVEVKRRVAADGNEPVQMKVHKSLKLWTFYVDLEESLGTLESTRVVYEKILDLR
IATPQIIINYAMLLEEHKYFEDSFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKSKLE
RAREIFEKAVEEAPAESVKPLYLQYAKLEEDYGLAKRAMRVYDQATKAVPPNEKLGMYEI
YIARAADIFGLPKTREIYEQAIESRLPDKDVKVMCLRYAELEKNLGEIDRARALYKHASQ
FANPKSDPDFWNKWHEFEVLHGNEDTYREMRRIMRSVDASYSQTHFILPEYLMQKDQMQT
LDEAKDVLKKAGVAEDEMAALERQLLPTTNDTSAKDGGRRLGFVSAGLQQNGETTANTED
IELPEDSDPEDEEKVEIAQKEIPDAVFGGLVRKRDEADDKGKEATDTENKENDGHLGALE
RIKRMRRGA
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgtcgattgcgcaggatctctatcccaccgaagaggactacctctacgaagaagaggta
cttcgaaaccctaacaatctcaaattatggtggcgatacctaatcgcgaagagcgacgcg
ccgttcaagaagcgcgccattatctacgagcgagctctcaaggccttgcccggaagctac
aagctgtggcacgcctatctccgcgagcgcctcgagatcgtgaggaatctaccgattact
cactcgcagtatcagacgctgaacaacactttcgagcgagccctcgccacgatgcacaag
atgccccgcatttggactatgtttttgcagtctctgacgcatcagaagctgattactcgg
acgcggcgcacgttcgaccgtgcattgtgcgcgctgccggttactcagcacgaccgaatc
tgggagtgttatctggtgttcgtgtcgcagaggggcgtgccgatagatacgtcgctgagg
gtgtacaagaggtacctgaagtatgatccaagtcatatcgaggattttattgagttcttg
gttaattcgcagttgtggcaggaggctgcagagaggttggctggagttttaaatgacgac
cagttttactctataaaggggaagacaaaacataggctatggttggaattgtgtgatttg
ttgactcagcacgctaccgagatatcgggattgaatgtggatgcgataattagagggggg
attaggaagtttacggatgaagtggggagactgtggacttcgttagctgattattatatt
aggagacagcttcttgagaaggcccgagatgtctttgaggaagggatgacgactgtagtc
acagtgagggatttcagtgttatttttgatgcatattcacaatttgaggacagtgtgttg
tcaattaagatggacaatatggatgacagtgatgaagaagatgggaatgaggatgacata
gaggaggatgacgaggaggatgataggttggatattgagaagttgaggaagaggatcagc
tgtttttggttgaaggatgacaaggatgtggatttgcggttggcgaggtatgagcatctg
atggacaggaggccggagttagctaacagtgtgcttttgaggcagaatcctcacaatgtg
gagcagtggcatcggagagttaagctttttgaagggaatcccacaaaacaaattttgact
tacacagaagctgtgaggaccgtggatcccatgaaggctgtggggaaaccccatactctg
tgggttgcatttgctaagttgtatgagactcatggagatgtttcaaatgcccgggtgatt
tttgataaggctgtgcaggttaattacaaggctgtcgatcatctagcaagcatttggtgt
gaatgggctgagatggagctcagacacaaaaatttaaagggtgcactggaactgatgagg
cgtgctactgctgagccatctgttgaggtcaagaggagagttgctgctgatggaaatgaa
ccagtgcaaatgaaggttcataaatccctcaagctttggacattttatgtggatttggag
gaaagcttgggtaccttggagtcaactcgtgtagtttatgagaaaatattggatctaaga
attgctactccccagattatcataaactatgcaatgcttctagaagaacacaagtacttt
gaagactcatttaaagtttatgagagaggtgtaaaaatatttaagtacccgcatgtgaaa
gatatatgggtcacatatctttccaaatttgttaagagatatggaaaatcaaagctggaa
cgagctcgagagatatttgagaaggcagttgaagaggctcctgcagagtcagtgaaaccc
ctgtatcttcaatacgcgaaattggaggaagactatggtctggctaaaagagcaatgcgg
gtgtatgatcaggctacaaaagctgtcccacctaatgagaagttgggcatgtatgagata
tatattgccagggcagctgacatattcggattaccaaaaactagggagatttatgagcaa
gctattgaatcacgactgccagacaaggatgtaaaggtcatgtgcttgagatatgctgaa
ctcgagaagaatcttggtgaaatcgatcgtgctcgtgcattatacaagcatgcatcacag
tttgctaatccaaaatctgatcctgacttctggaacaagtggcatgaatttgaagtgctg
catggaaacgaggatacatatcgggagatgcgcagaatcatgagaagtgttgatgctagc
tatagccagacgcactttatcctaccggagtatctgatgcaaaaggaccagatgcagacc
cttgacgaagctaaggatgttctcaagaaggcaggcgttgcagaggacgaaatggctgca
cttgagaggcaattactgcccactaccaatgacaccagtgctaaagatggtggtagacga
ttaggattcgtgagtgctggtttgcagcaaaatggagagacaacagcaaatacagaggat
atcgagcttccagaagatagtgatcccgaagatgaggagaaggttgagatcgcacagaaa
gaaattccagatgcagtgtttggaggattggtgcggaagagagacgaagcagacgacaaa
ggtaaagaagcaactgatacggaaaacaaagagaacgatggtcatttaggtgccttggag
agaatcaaacgaatgagacgaggcgcctag
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