Salvia splendens (scarlet sage): 121759366
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Entry
121759366 CDS
T07627
Name
(RefSeq) polyadenylate-binding protein 8-like
KO
K13126
polyadenylate-binding protein
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03015
mRNA surveillance pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121759366
09123 Folding, sorting and degradation
03018 RNA degradation
121759366
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121759366
03041 Spliceosome [BR:
sspl03041
]
121759366
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
121759366
mRNA cycle factors
Stress granule specific factors
121759366
Spliceosome [BR:
sspl03041
]
Complex C
Other components
Complex C specific factors
121759366
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
RRM_5
RRM_7
RRM_RdRP1_2
RRM_3
YflT
RRM_MARF1
SET_assoc
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
121759366
NCBI-ProteinID:
XP_042010856
LinkDB
All DBs
Position
12:33177764..33181978
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AA seq
653 aa
AA seq
DB search
MAQIQVQHQNVAATAAPNGVAAVAAPAPGGAAVGQFQTTSLYVGDLDFNVTDSQLYDLFN
SVGQVVSVRVCRELGTQRSLGYGYVNYANPQDAARALELLNFTPLNSKSIRVMYSHRDPS
VRKSGMANIFIKNLDKAIDNKALHDTFSSFGNILSCKIATDPHGQSKGYGFVQFDTEEAA
QSAIDKLNGMLINDKQVYVGHFLRKQERDTTQANAKFTNVFVKNLADTITDDNLKTTFGE
YGVITSAVVMRDADGKSKCFGFVNFEHADDAAKAVEALNGKKFDDKEWYVGKAQKKSERE
QELKTRFEQTTRETVDKFPGVNLYVKNIDDSIDDDRLRELFSGFGTITSCKVMRDPSGIS
RGSGFVAFSTPEEASRALTEMNGKMLISKPLYVALAQRKEERRAKLQAQFLQMRPVGIPP
SMAPRMPMYPPGAPGIGQQLFYGQAPAIMPPQGGFGYQQQLVPGMRPGAAPMPNFFMPLV
QQGQQGQRPGSRRGGPGQQNQQPVPMMQQQMMPRARMYRYPPGRNVPDGPIPGGMLSVPY
DLGGMLPRDSAVPQPMPVTALASALANATPEQQRTMLGENLYPLVDQLEHEHAAKVTGML
LEMDQTEVLHLLESPDALKSKVSEAMDVLRNVQQAGSPADQLASLSLNDNLVS
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggcccagattcaggtgcagcaccagaatgtggcggcgacggctgccccaaatggagtg
gcggcggtggcggcgccggcgcctggtggagcggcggtaggacagtttcagacgacctct
ctgtatgtcggtgacttggatttcaacgtaacggactcgcagctctacgatctgttcaat
tcggtcgggcaggttgtatcggtcagggtttgtcgcgagcttggcactcagcgcagcctt
ggctatggctatgtaaactatgccaacccccaggatgctgcaagagctttggaattgttg
aacttcactcccctcaatagcaagtcgatccgagtgatgtattctcaccgcgatccaagt
gttagaaaaagtggaatggcaaatatctttatcaagaatctggacaaagcaattgacaac
aaagctttgcatgacacgttctctagctttggcaacatcctttcctgcaagattgcgaca
gacccccatggtcagtctaagggttatggatttgttcaatttgatactgaagaagctgca
caaagtgctatagataagttaaatggtatgcttattaatgataagcaagtctatgtcggg
catttccttcgtaagcaagaaagggatactacacaggccaatgctaagttcaccaatgtg
tttgtgaaaaatttagctgataccattacagatgataatttgaaaacaacttttggtgaa
tatggagtaatcactagtgctgtagtgatgagggatgctgatgggaagtcgaaatgtttt
ggatttgtaaattttgagcatgctgatgatgctgctaaagctgttgaagctctaaacgga
aagaaatttgatgacaaggaatggtatgttggtaaagcccagaagaagtcggagagagag
caggaacttaaaactcggtttgaacaaactaccagggaaactgttgacaaatttcctgga
gttaatttatatgttaaaaacatagatgatagcattgatgatgacagactgagagaactg
ttttcaggttttggtaccatcacctcttgtaaggttatgcgtgatcctagtggaataagc
agaggatctgggtttgttgccttttcaactcctgaagaagcttcccgagctcttactgaa
atgaatgggaaaatgttaattagcaagcctctttatgttgcattggcacaacgtaaggaa
gagaggagagccaagttacaggcccaatttttgcaaatgaggcctgtaggaatcccacct
tctatggctccacgtatgcccatgtatccccctggtgcacctggtatcgggcagcagcta
ttttatggacaagcccctgctatcatgcctcctcagggtggctttggttatcagcagcag
cttgttcctggaatgcgccctggggctgctcccatgccaaacttctttatgccactagtc
caacagggtcagcagggccaacgacctggtagcagacgaggaggtccagggcaacaaaat
cagcaacctgtgccgatgatgcaacagcagatgatgccaagggcgaggatgtataggtat
cctcctggtcgtaatgtgccagatgggcccattcctggtggaatgctttctgtcccatac
gacctgggtggcatgcttcctcgcgattctgctgttccacagcctatgccagttactgct
ttggcttctgcccttgccaatgcaacacctgaacaacagaggacgatgctgggtgagaac
ttgtacccgctcgttgatcagcttgagcatgagcatgctgcgaaggttacaggaatgctt
ctggagatggatcagactgaggttcttcatttgctcgagtcgcctgatgctttgaaatca
aaggtttctgaggcaatggatgtcctgaggaacgttcagcaggctggtagccctgcggac
caacttgcttcgctgtcgctcaacgacaaccttgtttcttga
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