Salvia splendens (scarlet sage): 121759576
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Entry
121759576 CDS
T07627
Name
(RefSeq) WD-40 repeat-containing protein MSI1-like
KO
K10752
histone-binding protein RBBP4
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03082
ATP-dependent chromatin remodeling
sspl03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121759576
03083 Polycomb repressive complex
121759576
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sspl03036
]
121759576
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
121759576
Histone modification proteins
HAT complexes
HATB complex
121759576
HDAC complexes
Sin3A-HDAC complex
121759576
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
121759576
PRC2.2
121759576
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
121759576
Heterochromatin formation proteins
Other heterochromatin formation proteins
121759576
Chromatin remodeling factors
NuRD complex
121759576
NuRF complex
121759576
NuRF complex (fruit fly)
121759576
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1C_H4-bd
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
WD40_RFWD3
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
eIF2A
MIOS_WD40
WD_LRWD1
Beta-prop_HPS5
Beta-prop_RIG_1st
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_NUP159_NUP214
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
121759576
NCBI-ProteinID:
XP_042011147
LinkDB
All DBs
Position
12:32499705..32504485
Genome browser
AA seq
424 aa
AA seq
DB search
MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDRDEPPGKD
YSVQKMILGTHTSENEPNYLMLAQAQLPLEDAENDARQYDDERSEFGGFGSANGKVQIIQ
QINHDGEVNRARYMPQNSFIIATKTVSAEVYVFDYSKHPSKPPLDGACNPDLRLRGHSTE
GYGLSWSNFKQGHLLSGSDDAQICLWDINATPKNKALDAMQIFKIHEGVVEDVAWHLRHE
HLFGSVGDDQYLHIWDLRNPVMSKPVQSVVAHQSEVNCLAFNPFNEWVIATGSTDKTVKL
FDMRKLSTALHTFDCHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE
DGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDNILQIWQMAENIYHDEDDLPGDDA
AKPS
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggggaaagacgaggaagaaatgcggggggaaatcgaggagcgcctgatcaacgaggag
tacaagatttggaagaagaacaccccgttcctctacgatctggtcatcacacacgccctc
gagtggccctccctcaccgtcgagtggctgcccgaccgcgacgagccgccggggaaggac
tactccgtgcagaagatgatcctcggcacccacacctccgagaacgagcccaattacctg
atgctggcgcaggcgcagctgcccctcgaggatgctgagaatgacgctcgccagtacgac
gatgagcgctctgaattcggtggattcggctccgctaatggcaaggtgcaaattatccag
caaattaatcatgatggcgaggtgaatcgtgctcgctatatgcctcagaactcatttatt
attgccaccaagactgttagtgcagaagtttatgtcttcgattatagcaaacacccatct
aagcctcccttggatggtgcgtgcaaccctgatttgaggcttaggggccatagtaccgag
ggatatggtttatcgtggagcaattttaagcaaggtcatttgttgagtggttcagatgat
gcccaaatatgtttatgggatataaatgcaactccaaagaataaggctttagatgccatg
caaattttcaagattcatgaaggtgtggttgaagatgtagcatggcatctgaggcacgaa
cacttgtttggatctgttggagacgatcagtatttgcacatatgggatctccgtaatcca
gtaatgagcaagcctgtacaatctgtagttgctcatcagagtgaggtaaactgcttagcc
ttcaatccgtttaacgagtgggttatagcaaccggatctactgacaagactgttaaatta
ttcgatatgagaaagctttctactgccctccacacctttgattgccacaaggaggaggta
ttccaggttggatggaatccgaagaacgagaccatcttagcttcttgttgccttggtagg
agattaatggtctgggatcttagcaggattgacgaagaacaaacaccagaggacgcagag
gatgggccgccagagttgttattcatccacggtggtcatacaagcaagatatcagacttc
tcgtggaacccgtgtgaggattgggttgttgctagtgtggctgaagataatatactgcag
atttggcagatggcggaaaacatctaccacgacgaagatgatctgcccggagacgatgct
gccaagccttcctag
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