Salvia splendens (scarlet sage): 121759732
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Entry
121759732 CDS
T07627
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121759732
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121759732
04121 Ubiquitin system [BR:
sspl04121
]
121759732
03036 Chromosome and associated proteins [BR:
sspl03036
]
121759732
03400 DNA repair and recombination proteins [BR:
sspl03400
]
121759732
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
121759732
Ubiquitin system [BR:
sspl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
121759732
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
121759732
DNA repair and recombination proteins [BR:
sspl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
121759732
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-C3HC4_2
zf-RING_2
zf-RING_UBOX
zf-C3HC4
RTT107_BRCT_5
zf-C3HC4_3
zf-HC5HC2H_2
zf-C3HC4_4
zf-RING_5
zf-RING_6
zf-RING_10
PTCB-BRCT
zf-Nse
Motif
Other DBs
NCBI-GeneID:
121759732
NCBI-ProteinID:
XP_042011349
LinkDB
All DBs
Position
12:complement(2661771..2666750)
Genome browser
AA seq
958 aa
AA seq
DB search
MADASHLERMGRELKCPICLSLFNSAASLTCNHVFCNVCIEKSMKASSSCPVCKVPYRRR
EIRPAPHMDNLVSVYKSMEVASGVSIFNTQTEASPGPSVQNNGQTKPEASETGNKKQPGK
RGSKSASIFPTNKRVQVSPYTSARTEMVRENLTDRTAEINRNETNNGHVLQNNIPSTYEK
GKAHLPPFFWLRDEEDMEQSSQQTNDNLVMYTPPEAPCFSDIKDSDDERGDCNLSNNVDF
FDSEMFDWTQRPCSPELCSTPPTIQIEEHTAEEDVALKRVDATSTETAGQKNRPNSAVGK
CKREKISETKGRTRASNKKANANEPEKDKKAKSISKVTAVCAELGNVIYQDMQEGTKDTP
MTQKGKSRVGKKVLFDASVQEKDVQSLSDGVEPLASSKGAAFTQVSAPEMCQKSNEGQTK
SKKSAEDNKNSKKPTQLPTSGSKEKTKKSEIGKKVLDTEQDKEELISKLLSNPPGIHEEV
LDECVKRKYRKICRKSPSSAKKVKFSVQSMCKDSHSGKALGANEKDVTTDHLSEDIQVQR
DQSDMKTPSKVDKSFSSLSGHALQKCNTSPSTVCCAFCQSSEESEASGIMVHYVGGKLAM
DDARKNAIHVHKNCAEWAPNVYFEDDTVVNLENELSRSRRIRCCCCGIKGAALGCYDKSC
RKSFHVPCARLTPECRWDSENFVMLCPVHTSSQLPNGTPQSQSRKKSKSSAERKSCIHQD
KVKTNEEGKDRSPVQWKSRKTFKNLVLCCSALTNTEKETVTEFENLSGVTILKNWDPTVT
HVIASSDENGACRRTLKFLMGVLEGKWILSVQWIRACIEAGEIADEEQFEISVDIHGIRN
GPKLGRLRLLNKQPKLFDGYTFYLMGDFTPSYRGYLHDLVIAAGGKVLNRKPVDGSSETT
FIIYSVELPEQCKPNNGGSIVEQRRASAEALASCAGAQVTSNSWIMNSIAGYKLQTVG
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcatcacatctggagcgaatgggaagggagctgaaatgccctatatgtttg
agtctgtttaattcggccgcttcactcacctgcaatcatgtgttttgcaatgtgtgtatc
gagaaatccatgaaagcatcatcgagttgtcctgtttgtaaagttccatacaggcgaaga
gaaattaggccagctcctcatatggataatttggtaagcgtttacaaaagcatggaagta
gcatctggagtcagtatcttcaacactcagactgaagcttcacctggtccttcggtccaa
aataatggccaaacgaaacctgaagcttcagaaactgggaataaaaaacaacctggaaag
agaggatcaaagagtgcatcaattttccctacaaataaaagggttcaggtgtcaccatat
acaagtgcaaggactgaaatggtgcgagaaaacctgactgatagaactgctgaaatcaac
agaaatgaaactaataatggtcatgttttacaaaataatatcccttctacttatgaaaag
gggaaagcccatttacctccatttttctggctgagagatgaagaggacatggagcagtca
agtcagcagacgaatgacaatctggttatgtatacaccaccagaagctccttgcttcagt
gacattaaagattcagatgatgagagaggagattgtaacttatcaaacaatgtggatttc
tttgatagtgaaatgtttgattggacacagaggccttgctctcctgaactttgttcaact
cctccaactatacagattgaagaacatactgctgaagaggatgtagccttaaaacgtgtg
gatgccacctcaacagaaacagctggtcaaaagaacagacctaatagtgcagtaggcaag
tgtaaaagggaaaaaatctctgaaaccaaaggcagaacgagagcttctaataagaaagcc
aatgcaaatgagcctgaaaaggacaagaaagctaaaagcatttctaaagtaactgcagtc
tgtgctgaattaggcaatgtaatctatcaagatatgcaagagggtactaaagacactcca
atgactcaaaaaggaaaatccagagtaggtaaaaaggtcctctttgatgctagtgttcaa
gagaaagatgttcaatctttatctgatggggtagagcctctagcaagcagcaagggtgca
gcattcactcaagtttctgcaccagagatgtgtcaaaagagcaatgaaggacaaacaaag
tcaaaaaagagtgctgaagacaataaaaactctaagaaaccaactcagctaccaacatct
ggtagtaaagaaaaaactaaaaaatccgaaattggaaaaaaggtcttagatactgagcaa
gacaaagaggagttgatttccaagctgcttagtaatccaccaggaattcatgaagaagtt
ttggatgaatgtgtcaaaaggaagtatagaaaaatatgtagaaagtcaccaagctctgca
aagaaagtcaaattctctgttcagagcatgtgtaaggacagccatagtggtaaagcatta
ggtgctaatgaaaaggatgtgaccacagatcacttatctgaagatattcaagttcaaagg
gatcaatcagacatgaaaactccatcaaaagttgataaatcattttcctcccttagcggg
catgctttgcaaaaatgtaatacatctcccagtacagtttgttgtgctttctgtcaatca
tctgaagagtcagaggcttcagggatcatggttcactatgttggagggaagttggcaatg
gatgatgcaagaaagaatgctatacacgttcacaagaactgtgctgaatgggcacccaat
gtgtattttgaagatgatactgttgtcaaccttgaaaatgagctgtccagaagtcgaaga
attagatgctgttgctgtggcatcaaaggagctgctctcgggtgttatgacaagagttgt
cgtaagagctttcacgttccttgtgctaggttgactccagaatgccgatgggattctgaa
aactttgttatgctatgtccagttcatacatcatctcaactgccaaatggtacgcctcaa
tctcaatcaaggaagaaaagtaaatcttctgctgaaagaaaatcttgcatccatcaagat
aaagtgaaaaccaatgaagaaggcaaagacagatcaccggtacagtggaagtctcggaag
acgtttaaaaatttggttctctgctgctcagctctcaccaatacagagaaagaaactgtt
acagagtttgagaacttgtctggagtaacaatactaaagaactgggaccctaccgtcacc
catgtaattgcttcgtcagatgaaaatggagcatgcagacgtacactcaaatttttaatg
ggtgtcttggaaggaaaatggattttgagtgttcagtggattagagcttgcattgaagct
ggagagatagctgatgaggaacagtttgagatctcagtcgacattcatggaatcaggaat
ggaccaaagctcggcagattaagacttctaaacaagcaaccaaaactgtttgatggctat
acattctatctcatgggagatttcacaccttcatacagaggatatctccatgatcttgtg
attgctgctggaggaaaagttctgaacaggaagcctgttgatggaagctctgagacgacc
ttcatcatttacagcgtcgagcttccggaacagtgcaagccaaacaacggaggctcaatc
gtggagcagagacgtgcgagtgcagaagctttagcctcctgtgctggagcccaggtaacg
agcaattcatggattatgaattctattgcaggttacaaactgcaaacagttggttaa
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