Salvia splendens (scarlet sage): 121759960
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Entry
121759960 CDS
T07627
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit B-like
KO
K07466
replication factor A1
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03030
DNA replication
sspl03420
Nucleotide excision repair
sspl03430
Mismatch repair
sspl03440
Homologous recombination
sspl03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121759960
03420 Nucleotide excision repair
121759960
03430 Mismatch repair
121759960
03440 Homologous recombination
121759960
03460 Fanconi anemia pathway
121759960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sspl03000
]
121759960
03032 DNA replication proteins [BR:
sspl03032
]
121759960
03400 DNA repair and recombination proteins [BR:
sspl03400
]
121759960
Transcription factors [BR:
sspl03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
121759960
DNA replication proteins [BR:
sspl03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
121759960
DNA repair and recombination proteins [BR:
sspl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
121759960
MMR (mismatch excision repair)
121759960
DSBR (double strand breaks repair)
HR (homologous recombination)
121759960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Rhabdo_glycop_CD
SH3_Rv0428c
Motif
Other DBs
NCBI-GeneID:
121759960
NCBI-ProteinID:
XP_042011479
LinkDB
All DBs
Position
13:28620708..28624071
Genome browser
AA seq
622 aa
AA seq
DB search
MTRTVTPDAISVILANPCLDSSSDLPEIVVQVVDLKPTGNKYMFMASDGKMMVRALLQST
LASQVTSGNIQNLGLIRVLDYTLNDIPTKNEKFLIVSKCEVVSSALEAEYKADVKVEDSG
NSLKQNQEMDADVKTESPGIVFKPKQEVVTKSAAQIVHDQHGNTAPAARMAMTRRVHPLV
SLNPYQGNWTIKVRVTSKGNMRTYRNARGEGCVFNVELTDEDGTQIQATMFNDAAKKFFD
KFQMGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEASNEATFIPETKFSFTPID
ELGPFVNGRELVDVIGVVQSVSPTMSIRRKSNNETIPKRDIVIADETKKTVVVSLWKDLA
TSVGQELLDMADKSPVVAIKSLKVGEFQGVSLSALSKSIVLVDPDTPEAKKLRSWYDSEG
KDTSLAAIGNDSSLSNRNGARSMYTDRVTLSHITSNLSLGEDKPVYFSIKAYVSTIKPDQ
AMWYRACKTCSKKVTEAVGSGYWCEGCQKNEDGCSLRYIMALKVSDASGEAFVSVFNEQA
EKMIGCTADELNEIKLHDGEATYQKKLKEATWVPHLFRVSVAQNEYNNEKRQRITVRAVA
PIDYAAESKYLIEEMTKIKVSN
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgactagaactgtaaccccagatgcaatttctgttattctagcaaacccatgcctggat
tcctcttccgatttgccggaaatcgttgtacaagtggtcgatctcaagcccaccggcaac
aaatacatgttcatggcgagtgatggcaaaatgatggtgagggctctgttgcagtcgact
ctagcgtctcaagtgacatctgggaacatccagaatttggggcttattcgcgtgcttgac
tacactctcaatgacatcccaaccaagaatgaaaagttcttgattgtgtccaagtgtgag
gttgtgtcatctgcgcttgaggctgagtataaggctgatgttaaggttgaggatagtggg
aattctttgaaacagaaccaggaaatggatgctgatgtgaaaactgagtctcctggtata
gtgttcaagccaaaacaagaagttgtgactaaatctgctgctcaaattgttcatgaccag
catggaaatacggcaccagctgcccgaatggcgatgacacggcgagtccatccacttgtt
tctttgaatccttatcaaggaaactggacaattaaagtccgggtcacgagcaagggaaac
atgcggacttacaggaatgctagaggagaaggctgtgtatttaatgtagagttgacagat
gaagatggcactcaaatacaagcaaccatgtttaatgatgctgcgaagaaattctttgac
aagtttcagatggggaaggtttactacatatcaaagggaaccttgaaagtggcaaacaag
caatttaaaactgtgcaaaatgattatgagatgaccttaaatgaaaattcagaagtggaa
gaagccagcaatgaggcaacctttattcccgaaacaaaattcagtttcactccaattgat
gagttgggtccatttgtcaatggaagggaacttgttgatgttattggcgtggttcagagc
gtgtctcctacaatgagcattagaaggaagagcaacaatgaaactatcccaaagcgtgat
atagttattgctgatgagacgaagaaaactgtggtggtgtctctatggaaagatcttgcc
acaagtgttgggcaagaacttcttgatatggctgataaatctcctgtagttgctataaaa
tctctcaaagttggtgaatttcaaggtgtatcactatcggcactgagtaaaagtattgta
ttagttgaccctgacacaccagaagccaaaaagctgagatcttggtatgattctgaaggc
aaagacacttctttggctgctattggtaatgactcaagcctgtccaacagaaatggagct
cgctccatgtacactgacagagttaccttatctcatatcaccagtaacctttccttggga
gaggacaagcctgtatacttctccatcaaagcatatgttagcaccatcaaacctgatcaa
gcaatgtggtatcgtgcttgcaagacctgctccaagaaggttactgaagccgtgggatct
ggctactggtgtgaagggtgccagaaaaatgaagacggctgcagtttgagatacataatg
gcattgaaggtctctgatgcaagtggtgaagcgtttgtttcagttttcaatgagcaagcg
gagaaaatgattggatgcacagctgatgagctgaatgagataaaacttcatgatggagag
gctacttatcagaagaaactgaaggaggcaacatgggttcctcaccttttccgtgtcagc
gtcgctcaaaatgagtacaacaatgagaagagacagaggataaccgtcagagctgttgcc
ccaattgattatgcagctgaatccaagtatctgattgaagaaatgacaaagatcaaagta
tctaactag
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