Salvia splendens (scarlet sage): 121760006
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Entry
121760006 CDS
T07627
Name
(RefSeq) BRCA1-associated RING domain protein 1-like
KO
K10683
BRCA1-associated RING domain protein 1
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121760006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121760006
04121 Ubiquitin system [BR:
sspl04121
]
121760006
03036 Chromosome and associated proteins [BR:
sspl03036
]
121760006
03400 DNA repair and recombination proteins [BR:
sspl03400
]
121760006
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
121760006
Ubiquitin system [BR:
sspl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
121760006
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
121760006
DNA repair and recombination proteins [BR:
sspl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
121760006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-HC5HC2H_2
zf-C3HC4_3
zf-C3HC4_2
zf-RING_UBOX
Prok-RING_4
zf-RING_6
zf-C3HC4
zf-C3HC4_4
zf-RING_5
RTT107_BRCT_5
zf-RING_2
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
121760006
NCBI-ProteinID:
XP_042011540
LinkDB
All DBs
Position
13:9628679..9633186
Genome browser
AA seq
659 aa
AA seq
DB search
MSEIQNVARSLNPCIFHLHKLRFELNCALCLNMLNKPILLPCNHVFCNSCVEFSSHCPAC
QQRFTNQEIRPAFHMENIVAIYKNLDATFNSSILPLISTDSNIPVSRSIVTDQVTNNLGV
MASKTNDNCPVPAPSRIKSAKCSVSEELDVNHALEIWPGSSPSSVDTKHVDQHSSPGSRN
AGACKIRVNSSAGDQLGIVSGEADTKGTYHARESKRQKKLNYGPSGAALQSHTHSQNIVS
HSDAAASKLEDCKSTEDASIISSTAPWDASNVDGYICALCHSSKITEGTGHMLHYAGGKE
VAREEAAYSKTIPVHIKCIEWAPQVYFVNDTILNLESELARASKLKCSGCGLKGAALGCF
AKSCRRSYHVPCALEVLGCRWDCGEFLMLCPAHKSIKFPSEKSNSRKRSIGEKCSVPIEI
TPEQLNICSTSLSRPEQLVLCGSALSSEEKCLVANLAKTTGVTLYKFWNPNVTHVIAATD
SNGACSRTLKVLMAILNGKWVLSMDWVKACAEANHPVDEEPYEVNLDNHGFRDGPRTGRL
RVSENGPKLFHGLSFYFNGEFVPSYKNDLLGLVRAGGGNTIESMEAAVAERQSLEDFSTT
LVVYNHDNPQGCSATEARFVLSKRAAEAGDVAKNIDARFIPHTWILESIAACQILPFSS
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagattcagaacgtcgcgaggtcgcttaatccctgcatctttcatctccacaag
cttcgattcgagctcaattgcgctttatgtttgaacatgcttaacaagccgatcttgctc
ccgtgcaatcacgttttctgcaattcatgtgttgaatttagcagccattgccccgcatgt
cagcagcgttttaccaatcaagaaatcagaccagcctttcacatggagaacattgtggct
atttacaaaaatctggatgctactttcaactcttcgatcttgccgcttatatctactgat
tctaatataccagtttcgagatctatcgtaactgaccaagtgacaaataaccttggcgtg
atggcgtctaaaacgaatgataactgccctgtccctgctccaagtaggattaagtcagct
aagtgttctgtatcagaagaattagatgtgaatcacgctctagaaatttggcctggcagc
tccccttcctctgttgataccaaacatgtagatcaacatagcagtccaggttccagaaat
gcgggtgcatgtaaaattagagttaacagctctgctggagatcaattaggcatagtttct
ggtgaggcagatacaaaaggcacatatcatgcaagggaatctaagagacaaaaaaagcta
aattatggaccatctggtgcagctttgcaaagccacacacacagccagaatatagtttct
cattctgatgctgctgcttctaagcttgaggactgcaaatccacagaagatgcttccatc
atttcttcaactgcaccctgggatgcatcaaatgtggatggatatatttgtgcgctttgc
cattcttctaagataacagaaggaactggccatatgctgcactatgctggcggaaaggag
gtagcaagagaagaagcagcttactccaagacaattcctgtccatattaaatgcatagaa
tgggcccctcaggtctattttgtgaatgacactattttgaatttggagtctgaattagcg
cgagcttctaagctcaagtgcagtggttgtgggctgaagggtgcagctttgggctgcttt
gcaaagtcctgccgtagaagctatcatgttccttgtgctctggaggtgctaggctgcaga
tgggactgtggtgaatttttaatgctttgtccagctcataaatcaattaaatttccaagt
gaaaagtccaactccagaaagcgttccattggagagaagtgctctgtgcccattgaaatt
acacctgaacagttgaatatttgctcaacctcccttagtaggcctgaacagttggttcta
tgtggatctgctctatcttcggaggagaagtgtttggtggctaacttagctaaaactact
ggtgttactctgtacaagttctggaacccaaatgtcacgcatgtgattgcagctacagat
tcaaacggtgcatgtagcagaactctgaaagttctcatggctatcttaaatggaaaatgg
gtcctctccatggattgggttaaagcttgtgccgaagcaaatcatcctgttgatgaagaa
ccttatgaggttaacttggacaatcacgggtttcgtgatggcccaagaactggcaggttg
agagtatcagagaacggtccgaagcttttccatggattgagcttttacttcaatggcgag
tttgttccgtcttacaagaatgatctcttaggtttagttagagctggtggaggcaacact
attgagagcatggaggctgcagttgcagaaaggcaaagtcttgaagatttttcgacaacg
ttagtagtttacaatcacgataaccctcaagggtgttcagcaacggaagcaaggtttgtt
ttgtcgaagagggcagcagaagcaggggatgtggcgaaaaacatagatgctcggttcatt
ccgcatacatggatcttggaatccattgctgcatgccaaatcttgccattttcatcctga
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