KEGG   Salvia splendens (scarlet sage): 121760838
Entry
121760838         CDS       T07627                                 
Name
(RefSeq) THO complex subunit 4A-like
  KO
K12881  THO complex subunit 4
Organism
sspl  Salvia splendens (scarlet sage)
Pathway
sspl03013  Nucleocytoplasmic transport
sspl03015  mRNA surveillance pathway
sspl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sspl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    121760838
  09122 Translation
   03013 Nucleocytoplasmic transport
    121760838
   03015 mRNA surveillance pathway
    121760838
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sspl03019]
    121760838
   03041 Spliceosome [BR:sspl03041]
    121760838
Messenger RNA biogenesis [BR:sspl03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     121760838
    TREX complex
     121760838
Spliceosome [BR:sspl03041]
 Complex C
  Other components
   EJC/TREX
    121760838
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    121760838
SSDB
Motif
Pfam: FoP_duplication RRM_1
Other DBs
NCBI-GeneID: 121760838
NCBI-ProteinID: XP_042012378
LinkDB
Position
2:complement(10549340..10551503)
AA seq 232 aa
MSGAALDMSLDDLIKNNKKSGVARGRGRAAGSGPARRPTNRFANRVTPYSAPKAPETACG
HDMFPAGGRSSSIETGTKLYISNLDYGELFSEVGDLKRYVVHYDRSGRSKGTAGVVFSRR
QDAMAAIKRYNNVQLDGKPMKLELVGTNVTAHDAGAGGFASAGSFGDSNVAPRSGQGRGG
FGRPRGGRGRGFGRGRGQGGGQGRGGRSGEKVSAEDLDADLEKYHADAMQTN
NT seq 699 nt   +upstreamnt  +downstreamnt
atgtcaggcgctgcgctcgacatgtctctcgacgacctaattaagaacaacaagaaatct
ggcgtcgcccgtggcagaggtcgcgccgccggttctggccccgctcgccgccccacgaac
cgtttcgcgaatcgcgttacaccctattccgctcccaaggctcctgagacggcttgtggc
catgacatgttcccagctggcggccgatcttccagtatagagacagggaccaagctgtat
atttccaatttggattatggggaactgttttcggaggttggcgacctgaaaagatacgtt
gtacactatgataggagtgggcgatcgaagggtaccgctggagtagtcttctcaagacga
caagatgctatggctgctatcaagcgatataataatgttcagcttgatgggaaaccaatg
aaactagaacttgttggaacaaacgttacagcacatgatgctggcgctggagggtttgct
tctgctggctcttttggtgattcaaatgtagctcctcgaagtggacaaggaagaggtggt
tttggaaggccacgaggcggaagaggtcgtggatttggaagaggccgtggacagggaggt
ggacaaggaagggggggccgcagtggtgagaaggtatctgctgaagatcttgatgctgat
ctagagaagtaccatgcagacgcaatgcagacaaactaa

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