Salvia splendens (scarlet sage): 121760838
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Entry
121760838 CDS
T07627
Name
(RefSeq) THO complex subunit 4A-like
KO
K12881
THO complex subunit 4
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03013
Nucleocytoplasmic transport
sspl03015
mRNA surveillance pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121760838
09122 Translation
03013 Nucleocytoplasmic transport
121760838
03015 mRNA surveillance pathway
121760838
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121760838
03041 Spliceosome [BR:
sspl03041
]
121760838
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
121760838
TREX complex
121760838
Spliceosome [BR:
sspl03041
]
Complex C
Other components
EJC/TREX
121760838
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121760838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FoP_duplication
RRM_1
Motif
Other DBs
NCBI-GeneID:
121760838
NCBI-ProteinID:
XP_042012378
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All DBs
Position
2:complement(10549340..10551503)
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AA seq
232 aa
AA seq
DB search
MSGAALDMSLDDLIKNNKKSGVARGRGRAAGSGPARRPTNRFANRVTPYSAPKAPETACG
HDMFPAGGRSSSIETGTKLYISNLDYGELFSEVGDLKRYVVHYDRSGRSKGTAGVVFSRR
QDAMAAIKRYNNVQLDGKPMKLELVGTNVTAHDAGAGGFASAGSFGDSNVAPRSGQGRGG
FGRPRGGRGRGFGRGRGQGGGQGRGGRSGEKVSAEDLDADLEKYHADAMQTN
NT seq
699 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcgctgcgctcgacatgtctctcgacgacctaattaagaacaacaagaaatct
ggcgtcgcccgtggcagaggtcgcgccgccggttctggccccgctcgccgccccacgaac
cgtttcgcgaatcgcgttacaccctattccgctcccaaggctcctgagacggcttgtggc
catgacatgttcccagctggcggccgatcttccagtatagagacagggaccaagctgtat
atttccaatttggattatggggaactgttttcggaggttggcgacctgaaaagatacgtt
gtacactatgataggagtgggcgatcgaagggtaccgctggagtagtcttctcaagacga
caagatgctatggctgctatcaagcgatataataatgttcagcttgatgggaaaccaatg
aaactagaacttgttggaacaaacgttacagcacatgatgctggcgctggagggtttgct
tctgctggctcttttggtgattcaaatgtagctcctcgaagtggacaaggaagaggtggt
tttggaaggccacgaggcggaagaggtcgtggatttggaagaggccgtggacagggaggt
ggacaaggaagggggggccgcagtggtgagaaggtatctgctgaagatcttgatgctgat
ctagagaagtaccatgcagacgcaatgcagacaaactaa
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integrated database retrieval system