Salvia splendens (scarlet sage): 121761822
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Entry
121761822 CDS
T07627
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121761822
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121761822
Enzymes [BR:
sspl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
121761822
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
121761822
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
121761822
NCBI-ProteinID:
XP_042013433
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All DBs
Position
13:complement(21087556..21092278)
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AA seq
611 aa
AA seq
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MYFRRYLCSQTAAAHRRRYLRPVKQVVKSNFSETLAEIKESIVSSDFVAVSLQKTGSYSA
PWQKCLPIDTDETAYWKAKRAAERFQILQFSVCPFSVKASKLIANPYNFQLFPRHEVKAG
MPSYGFLCQSSCLASMAQEGFDFNACIYNGISYMSRAQESAATVQTRSVLLNGGGLLSTS
ALSVADVIFSERIKTRVKNWMNGCNNQHKTGDYLISSLRKLVERSENYGSRPSLTIDVCS
ERQVQLTSEALKEFVNIVLVRPLAKAGVEAVQVVLTSSEEDKNLLVKEIQGLEEEHRRLV
SGFREVIDLISTSQRPVVVHNSLNDFAFIHEKFLAPLPPTTNEFSSSLLSVFPHILDVNH
LMKELGLFDEMNNLSSAISYLDSRFSASIDMEVSYEEKTDCVDVHGHSVMKVCQLFVKLC
SILKISLEIPEGGHTQLPALLQCSSNMLCSSDVRDPCNDDVRIWTSKSRTVSLRNLVFLW
GFRRGMSAQDLKDVLCNSHDVFSEEFDVKMVDRTCAIVVFWTPGVSKSFLGIMDSGECFS
NKLENMILEGLKAADYETYRRVCKSDLWKPNLAECLAQATDETVVFSGAKMQQEKSVICR
NNDEMINLDEL
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgtatttccgacgctatttatgctcgcaaacagccgccgcccaccgccgccgctaccta
cggccggtgaagcaagtggttaaatctaacttctccgagactttagctgaaatcaaggaa
agcatcgtcagctccgatttcgtagcggtttcgttgcagaagaccggcagctactccgcg
ccgtggcaaaaatgcctcccgattgacacggatgagacggcttattggaaggccaagcgc
gccgctgagcgatttcagattctacagttctcggtttgccctttctcggttaaagcttct
aagctcatcgcgaatccgtataacttccagttgtttccgaggcatgaggtgaaagctggg
atgccatcttatggttttttatgccaatcatcgtgtttggcctctatggcgcaagaaggt
tttgatttcaatgcttgcatatacaatggcatatcatacatgtctagagcacaagaatca
gctgcaacagttcaaactcgaagtgtattactgaacggtggcggtttgctatctacttca
gccttgtcagttgctgatgttatattttctgaaaggatcaaaactcgagttaagaactgg
atgaatggttgtaacaatcaacataaaactggggattatctgataagttcattgaggaaa
ctagtagaaagatctgaaaactatggttccagaccatccttgaccatagatgtctgcagt
gaacgccaggtgcagcttacatcggaggcgttgaaagagtttgttaatattgtactagta
cgtcctctggcaaaagcaggggtagaggctgttcaagttgttttgacgagttcagaagaa
gataagaatcttcttgtgaaggaaattcaaggtctggaagaggagcatagaaggcttgtt
agtggctttcgagaggtgatagacttgatttctacttctcagaggccggttgttgtgcac
aactcacttaacgattttgccttcatacatgaaaagttccttgctccacttcctccaact
acaaatgaattctcgagttctttgctttcggtttttcctcatatactcgatgtcaaccat
cttatgaaagaacttggattatttgatgaaatgaataacttgtcatcagccatttcctat
ctggatagtaggttctctgcgtcaatagacatggaagtttcttatgaagagaagacagac
tgtgtcgatgttcatgggcatagtgttatgaaagtatgccagttgtttgttaaactgtgc
tctatactgaaaatctctttagagattcctgaaggaggtcatacccaattgcctgcttta
cttcaatgcagttccaatatgttatgttcaagtgatgttagagatccttgcaatgatgac
gtgagaatttggacatccaaaagtagaacggttagcttaagaaatttggtattcttgtgg
gggtttagaaggggaatgtcggcccaagatctgaaagacgttctgtgtaattcacatgat
gttttctcggaagaatttgatgttaagatggtggataggacatgtgctatagttgttttc
tggactcctggtgtctcaaaaagttttcttgggataatggattctggagaatgtttctct
aataagctggaaaatatgatattggaaggcctgaaagctgcagattacgagacatataga
agagtttgcaaatctgatttatggaaaccaaatctagcagagtgcttggcccaagccaca
gatgaaaccgtagtattttctggagccaagatgcagcaggagaaatcagtaatatgcagg
aataatgatgagatgattaatctggatgaactttaa
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