Salvia splendens (scarlet sage): 121762396
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Entry
121762396 CDS
T07627
Name
(RefSeq) endoribonuclease Dicer homolog 2-like isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
sspl
Salvia splendens (scarlet sage)
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sspl03036
]
121762396
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
121762396
microRNA pathway
RISC loading complex
121762396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
DEAD
Dicer_dimer
Helicase_C
ResIII
PAZ
Cas3-like_C_2
SNF2-rel_dom
SLFN-g3_helicase
dsrm
AAA_22
Motif
Other DBs
NCBI-GeneID:
121762396
NCBI-ProteinID:
XP_042014202
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All DBs
Position
13:34997720..35006138
Genome browser
AA seq
1416 aa
AA seq
DB search
MDSIRRVDDSSAKKRERERGRRKEDINMAIDEGNQQLVADPLSFARSYQLEALEMALKDN
TIVLFETGTGKTLIAIMLLRSYSHLLRKPSPHIAVFLVPTVVLVTQQSEVVALHTDLKVG
KYYGEMGVDFWDEATWKQELDKYEVLVMTPQILLDALRHTFLRLDQIKVLIFDECHNARG
KHQYACIMTEFYHRELAKGRQLPRVFGMTASPIKAKASSSEAAWKQIQDLENLMHSKVFT
CESDAILTRYLPFSTPKLKFYNEKNNPCSSFETVKEDLQKLAEKHISSLSKLSVSPSVAK
SATDRLKKLLSTLMFCLTELGIWLAVKAAEVYSRGNGAIFMWGEVDVNGERVIKAFSSDA
LELLSAHLPTGLQLIHNDLRASMTDGYLTSKIICLVETLLEYREQNDLRCIVFVERIVTA
IVIRILLNELLPEVTGWRTEYTAGNNSRFQSQSRKEQNKIVDELRKGTVNIIIATSMLEE
GLDVQSCNLVIRFDLSATICSFIQSRGRARMQNSDFVCMVKSDDHSAIARVNNYLASGSI
MRQECLSHANLPCEPLAKEMHGEPWYEVEKTGALVTLSSSTALLHFYCSRLPSDRYFKPY
PLCTVDKMLGSCTIRLPHGCPIRTITVSGTKSPKQQACLEACKELHRVGALTDNLVPDIV
EEEAEPQEFGYEPYLDEQDRYFPEELIGYHNDESKMPYYCYLLELEPNFQYDVKPQNIVL
AVHKMLNRDLGEFGFDLNADRGKMIVNVNLVGKLTLTPSEVALCQQFQVKLFNLLLKRNL
DKLHEEDEHSRGDGSVVFNYLLIPALGSRHDLSIDWRCISSVLYQKNAAFADHSKCSSAV
HTKNGLVCHCMIENSLVCTPHNGFLYCVNSTLDGVRGDTYFTLKDKESITYKAYYKEKHD
ISLEYEQENLLGGKHIFTVHNNLQRCRTQNKKEPSYSSCELPPEICLILMSPISISTVYS
FSFLPSLMHRIESLAVASNLKSIPVGGTTNVEIPAIKVLEALTTKKCQEELHLESLETLG
DSFLKYAATQQLFKTHQSRHEGLLSLKRQRVICNASLCKLGRDRKIPGFVRTEPFDLKTW
TIPGVPCDFSVFKGEQISTSGKVYTGRSRQIKSKTVADVVEALIGAFLSAAGEVAALSFM
VWLGIEVNFEIVPYTKTFVMNPDMHVNIGYIESLLGYKFQDASLLVEALTHGSYMRPEIP
TCYQRLEFLGDAVLDYLITVHLYHNYPGLSPGLLTDLRSASVNNDCYALSAIKAGLHKQV
LHLSPGLHRHVAETVDKAEDLRLVETFGWESEANLPKVLGDIIESLAGAIYVDSGHDKET
VFRCMKPLLDPLVTPETLRIHPKRELIQLCQQENYTMRKTQISRHAGDGQAHASVAVEAR
GVVHEETRPAKDRKLAERLACKAVLKTLKEILAADS
NT seq
4251 nt
NT seq
+upstream
nt +downstream
nt
atggattcgatacgacgagttgacgattcaagtgcgaagaagagagagagagagagaggg
agaaggaaagaagatatcaatatggctatagacgaaggaaaccagcagcttgtggcagat
cctctctccttcgccaggagttatcagctagaagcactggagatggcattgaaagacaac
actattgttctctttgaaacaggaactggaaagacacttattgcgataatgcttcttcgc
agctattcacatctcttgagaaagccgtcgcctcatattgctgtgtttttggtccccact
gtcgtcctggtcacacaacaatctgaagttgtggctctacacacggaccttaaagtggga
aagtattacggtgagatgggtgttgacttctgggacgaggcaacatggaagcaggagctg
gataaatacgaagtgcttgtaatgacgccacaaatcttacttgatgcattgaggcacaca
tttttgaggctggaccagattaaggttctaatattcgatgaatgccataatgcaagagga
aaacatcagtatgcttgcataatgacggagttctatcatcgcgaattagcaaagggtagg
cagcttcccagagtatttggcatgactgcttcgcctataaaggctaaagcttcatcttca
gaagccgcctggaaacagattcaggacctcgaaaatctgatgcactctaaggttttcaca
tgtgaatcagatgctattttgactcggtaccttcccttttcaactccaaagttgaagttt
tacaatgaaaagaataacccttgctcaagttttgaaaccgtgaaagaagatttgcagaaa
ttggcagagaagcatatatcttccctaagcaagctgagtgtttcaccctctgtggcgaaa
tctgcaacggacagattaaagaagcttttgtctacgcttatgttttgtttgactgagctg
gggatttggttagctgtaaaggcagcagaagtttactcacgtggaaatggggccatcttc
atgtggggtgaggtggatgtaaatggcgagagggttataaaggctttcagctctgatgca
ttagaattgttgtctgcacaccttccaactggtctacagttgattcacaatgatctaaga
gcaagcatgaccgatgggtatcttacgtcaaaaatcatatgccttgtggagactcttctg
gagtacagagaacagaacgatctgaggtgtattgtatttgtagaaaggatcgtcactgca
attgttattcgtattctgctgaatgaattgcttccagaagtgactgggtggaggacagaa
tacacggcagggaataattcaaggtttcagtctcaaagtcggaaagagcaaaataaaatt
gtagatgaattgcgcaagggaacggtgaatataatcatcgcgacatctatgcttgaagag
ggtttggacgttcagtcgtgcaacctggtcattagatttgacctttctgcaaccatatgc
agcttcattcaatcgcgtggccgtgctcgtatgcaaaactcagattttgtgtgtatggtg
aaaagtgatgatcattcagccattgctcgtgtaaataactatttggctagtggaagtata
atgcggcaggagtgtttgagccatgcgaatcttccgtgtgaaccactggctaaagaaatg
catggtgagccttggtatgaggttgaaaaaacgggagcgcttgtgactttgagttctagc
acggcattgcttcacttctattgctcacggctgccctcagacaggtactttaaaccgtat
cctctctgtactgtcgataaaatgctgggaagttgtacaattcgactccctcatggctgc
ccaattcgaactataacagtttctgggaccaaatcaccgaagcaacaagcatgcctcgaa
gcttgcaaagagcttcatagagtcggtgccctgacagacaaccttgtcccagatattgtg
gaggaagaggcagaacctcaagaatttggctatgaaccatatttggacgagcaggataga
tattttccagaagagttgattgggtatcacaatgatgagtccaagatgccttattactgc
tatctgctcgagttagagccaaattttcagtatgatgtaaagcctcagaacattgtcctg
gctgttcataagatgttaaatcgagatcttggagagtttggcttcgatttaaacgctgat
aggggaaagatgattgtgaatgtgaacctagttggaaagcttacactaactcccagtgag
gttgcactctgtcagcaatttcaagtcaaactgttcaaccttcttctcaaacgtaactta
gacaagcttcatgaagaggatgaacattctagaggagatggttcagttgtgtttaattat
ctacttatccctgctctgggctcacgtcacgacctttctattgattggagatgcattagt
tcagttctataccaaaagaatgctgctttcgctgatcattcgaaatgctcaagtgcagtc
cacacgaagaacggcttggtgtgtcattgcatgatagagaattcgttagtttgtactccc
cataatggcttcctgtattgcgtaaacagcacattggacggtgttcgtggagatacatat
tttactctgaaagacaaggaatctattacttataaagcgtattataaggagaagcatgat
ataagtttggaatacgaacaggagaatcttctaggagggaagcacatattcactgtgcat
aataacctccaacgatgccggactcaaaataagaaagaaccgagttatagctcatgtgaa
ttaccacccgagatttgcttaatcttgatgtcacctatatcaatttctacggtttattct
ttttcgtttcttccgtctcttatgcatcgtatcgagtcacttgctgtagcttccaacttg
aaaagtatacctgtcggtgggacaacaaatgttgaaattccagcaatcaaggtgttggaa
gctctcacaacgaagaaatgccaagaggagcttcatttggaatctttggagactctcgga
gattcgttcctcaaatatgctgctactcagcagctattcaaaacacatcaaagtcgacat
gaggggcttcttagccttaaaaggcagcgagtcatttgcaatgcttcattgtgcaaactt
ggacgtgaccgcaagattccgggcttcgtccggactgagccatttgatctcaagacatgg
acgatacctggagtcccttgtgatttcagtgtatttaaaggagaacagatatctacatct
ggaaaagtctacactggaagaagtagacagatcaaaagcaaaaccgtagcagatgttgtt
gaagccctaatcggtgcatttctaagtgccgcaggtgaagtagcagccctatccttcatg
gtgtggctcggtatcgaagttaactttgagatcgtgccttacacgaagacgtttgtcatg
aaccccgacatgcacgtaaatatcggatatatagagtcccttctaggatacaagtttcag
gacgcgtccctcctggtcgaagcgttgactcacggctcatatatgcggcctgagatcccc
acctgctaccagcggctggagtttctcggggacgcagtgctcgattatcttatcacggtt
catctatatcacaattatcccggcctctcacccgggctgcttactgatctaaggtcggcg
tctgtgaataatgattgttatgctctatcagccatcaaggccggattgcataagcaagtc
ctccatctctcgcccggtcttcaccggcatgtagctgagactgttgacaaggccgaggat
ttacggttggtcgagactttcgggtgggaatctgaggcgaatctcccaaaggtgcttgga
gatatcatcgaatctttagcgggtgccatctatgtcgactcggggcatgacaaggaaacc
gttttccggtgtatgaagcccctgcttgatcccttggtcacaccggagacgcttaggatc
cacccaaaaagggaactgatccaactgtgccagcaggaaaattatacaatgcggaagact
caaatttccaggcacgcgggcgacgggcaggcacatgcttcggtggcagtcgaagctcgt
ggtgttgtgcacgaggaaacgcggcctgctaaagaccgcaagctggctgaaagactggcc
tgcaaagctgttctcaaaactctcaaggaaatcttggctgcagattcttga
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integrated database retrieval system
