Salvia splendens (scarlet sage): 121762592
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Entry
121762592 CDS
T07627
Name
(RefSeq) uncharacterized protein LOC121762592 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121762592
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspl03021
]
121762592
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121762592
Transcription machinery [BR:
sspl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121762592
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
121762592
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf-C2H2
Motif
Other DBs
NCBI-GeneID:
121762592
NCBI-ProteinID:
XP_042014458
LinkDB
All DBs
Position
13:complement(25524981..25533040)
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AA seq
985 aa
AA seq
DB search
MEMESTRRSFDRSLSKEPGLKKPRLTEDSAAADRITNGRAGFVQRPAISNPAVGGGPRTQ
RERDSESSDSMRGAFHHQTEAQLHQELVTQYKTALAELTFNSKPIITNLTIIAGESLPAA
KAIAATICNNIIEVPSDQKLPSLYLLDSIVKNIGRDYIKFFASRLPEVFCKSYRQVDPSI
HQGMRHLFGTWKGVFPPQSLQLIERELGFTSAANVSAASRTESQAQRPAHSIHVNPKYLE
ARQRLQTSRSIQQHQRDQVNNPVRQKSSGVEFADDYGSGVLGRSGLGSGRMAEHLKDPGY
DRPWDESDDLIGMGHQKNGFGLKHGLESYVAHESVNFDLDLQPKKNISSRNTNGMRENWK
DSEEEEYTWSEMNSRPTVADAPTKNQWAPANYDRVDFESHLPGHQNIHDIGPRDDDEFSI
DSISMDRSQVASGAQVPLWSQKLHPPEGSMHLGSGKTLSVQSEGYATGLNSTKSTMGKTH
SQSQLGQTHIGMPSFKFQMNETTLSKASMGQERQTLAPSSSARSLVHQRPPSPSVASHGQ
NQFLNNSSERNPTATGPPKDPRRRPGQKNTNYPDQVSEDPPMPTRGVYQASTQKPQPTNL
RSTSTMAPPTKQRKHAPAALPRSVEVSQFETSAPEHRLLPSQMSGSGSRSTMGNSSSNQS
NPFTVDSPGKSITSSLTGSLNSPISSQETKPGSSVKMPSAVNSTSNPFSSLLNSLVAKGL
ISSSKSDPVLSTSPKPDQPMDKVPETAKPSSAPVTSVPVTLSKPIVSVSDKPSSSEATLN
ASDTLAPSTEKIKHLIGFDFKPDVVRKFHPDVISDLLCNLPHLCTICGLKLKFQEQLDKH
IKWHASKVPEDDPLSKMSRSWYTDVVDWVSGVGNTHLESSPLDIGGSGDILESNEPLVPA
DESQCACILCGELFEDFYDQENGEWMFKGALYLTIPSPNEGLGATSDTLVLSPIVHSDCI
SEDTMNDLGLPYDVKWKRNNISRRE
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagagtacacgaagatcgttcgacagatctctttcgaaagaaccgggactg
aagaaacctaggcttacagaggactctgctgcagcggatcgaatcaccaatggccgtgcc
ggatttgtccaacgtcctgctatttcgaaccctgctgttggcggagggccaaggactcag
agggaacgagactcagagagtagcgattctatgcggggggcctttcatcaccagacagag
gcgcagttgcatcaggaactggtgactcagtacaagaccgcattggctgagctgactttc
aattcgaagcccataataaccaacctgacaattattgccggagagagtttgcctgcggcc
aaggccattgcagctactatctgcaacaatattattgaggttcctagcgatcaaaaactg
ccttctctgtatttattagacagcattgtgaaaaacattgggagagattacataaaattc
ttcgcttccagattaccggaggtcttttgtaagtcatatagacaggttgatccttcaata
caccaaggtatgcggcacctctttggcacctggaagggagtcttccccccacagtcgctt
cagctgattgagagggaacttggattcacctctgcagctaatgtatcagcagcctctaga
actgaatcacaagctcaacgtcctgcacatagcattcatgtaaatcctaagtatttggag
gcaaggcagcgactgcaaaccagcaggtctatccagcaacatcaaagagatcaagtaaat
aatccagttcgtcagaaaagttctggtgtagaatttgcagatgattatggttctggtgtc
ttggggcgttcaggcttgggaagtggaaggatggcagaacaccttaaagatcctggatat
gacaggccctgggatgaatcagatgatttgattgggatgggacatcaaaagaatggtttt
ggtctgaaacatggattagaaagctatgttgcccacgaatccgtaaatttcgatttggat
ctacagcctaagaaaaatatatccagtaggaacacaaatgggatgagggagaactggaaa
gactctgaggaggaggagtatacctggagtgagatgaactctagacctactgtagctgat
gctccaactaaaaatcaatgggcaccagccaattatgatagagtggattttgaaagccat
ctcccaggacatcaaaatatacatgatattgggccaagggatgatgatgaattctcaatt
gattccatctccatggatcgcagccaagtggcttcgggggctcaagtgccattgtggtca
caaaagctgcatccaccagaagggagtatgcatttagggagtggtaaaaccttatcagtt
cagtctgagggatatgcaactgggttgaatagcaccaaaagtacaatgggcaagacccat
tctcagtcacagctcggtcaaactcatattggaatgccaagctttaagttccaaatgaat
gaaacaactttgtcgaaagcatcaatgggtcaagagcggcagacccttgccccttcatcc
tccgcacgatcattagtgcatcaacgtcctccgtcaccttctgttgcttctcatggccag
aatcaatttctaaacaattcttctgagcgcaaccccacagctacaggtcctcctaaagat
cctagaaggcgtccagggcaaaagaacacgaactatcctgaccaagtttcagaggatcct
cctatgccaactcggggagtttatcaggccagcacacagaagccacaacctacaaatcta
cggtctacatccactatggcacctcccactaaacaaaggaaacatgctcctgctgctcta
ccaagaagtgttgaagtctctcaatttgagacttctgctcctgaacaccgcttgctacca
tcacaaatgtcaggctctggaagccgctcgacgatggggaattcgtcttccaaccagtca
aatccttttactgttgattcccctggaaaatccattactagttcactaacaggtagctta
aatagccctattagttctcaagaaaccaagcctggttcatctgtgaagatgccaagtgca
gttaattccacctcaaatcctttttccagtctcttaaactcattggttgcaaaaggcctg
atatcttcttcgaagtctgatccagtgttgtctacatcacctaaacctgatcaacctatg
gacaaagttccggagactgcaaaacctagttcagctccagttacttctgttccagtcaca
ttgtcaaaacctattgtgtctgtgagtgacaagccatcttcatctgaggctacacttaat
gcttctgacacattggccccctcaacagaaaagataaaacatcttattggttttgacttc
aagccagatgtagtccgtaagttccatccagatgtgattagtgatcttctctgtaatctt
ccacatctttgtaccatatgtggtcttaaacttaaatttcaagaacagcttgacaaacac
attaaatggcatgcatcaaaggttcctgaggatgaccccttgagcaagatgtcaaggagt
tggtacacagatgtagttgattgggtttcaggagttggtaatactcatcttgaaagtagt
cctttggatataggaggttcaggtgatatactagaaagtaatgagccattggtcccagca
gatgagagtcaatgtgcatgtatattgtgtggtgagctgtttgaagatttctacgatcaa
gaaaacggtgaatggatgtttaaaggagctctttacttaaccatcccatccccgaacgag
ggacttggagctacaagtgatactttggttcttagtccgatagtccattctgactgtata
tcagaagacactatgaatgacttggggctaccttatgatgtcaaatggaaaaggaataac
atctcaaggagggagtaa
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