Salvia splendens (scarlet sage): 121762664
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Entry
121762664 CDS
T07627
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121762664
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121762664
03036 Chromosome and associated proteins [BR:
sspl03036
]
121762664
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121762664
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
121762664
mRNA degradation factors
5'-3' decay
Decapping complex
121762664
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Gene silencing
piRNA pathway
121762664
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Aldedh
Cas3-like_C_2
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
121762664
NCBI-ProteinID:
XP_042014551
LinkDB
All DBs
Position
13:complement(3904318..3910137)
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AA seq
492 aa
AA seq
DB search
MSSRARYPPPGMGGGRGGYGGMNPNAGPNPNFQPRNPMHQYVQRSPAPSNQNQQLFQNQQ
QWLRRNQLPPSDSAVDEVEKTVQSEAVDSSSQDWKANLKLPPRDNRYRTEDVTATKGNEF
EDYFLKRELLMGIYEKGFESPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKI
DQDKNVIQVVILVPTRELALQTSQVCKELGKHLQIQVMATTGGTSLKDDIMRLYQPVHLL
VGTPGRILDLANKNVCVLNECSMLIMDEADKLLSPEFQPSIEQLIRFMPVNRQILMFSAT
FPVTVKDFKDRYLRKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSII
FCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGID
IQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQ
IPPQIDLAVYCQ
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgagttcgcgagcgagatacccaccgccgggaatgggtggcggcagaggcggatacggc
ggaatgaacccgaatgccggaccaaaccctaattttcagcctcgaaaccctatgcaccag
tatgtgcaaagaagtccagctcctagtaatcagaatcaacaattgtttcagaatcagcag
caatggctgcgaagaaatcagctgcctccttccgattccgctgtcgacgaggttgaaaag
accgtacagtcggaagccgtcgattctagttcacaagattggaaggcaaacttaaagtta
ccaccacgggacaatcgttacagaactgaggatgttacagctaccaaaggaaatgaattt
gaagactactttttaaagcgcgaactgctaatgggaatatacgaaaagggtttcgagagc
ccttctccgatccaggaagagagtattccaattgctctcactggaagtgatattttggct
agggcaaaaaatggaactggaaaaactgcagcgttttgcattcctgccttggagaagatt
gatcaagataaaaatgttattcaagttgttattcttgtcccaacaagagaattggctctt
caaacatcacaagtttgtaaagaactcgggaagcacttacaaattcaagtcatggcaact
actggtggaactagcttgaaagatgacataatgcgcctttatcaaccagtgcatttactt
gttgggacaccaggaagaattcttgatcttgctaacaagaatgtctgtgttctgaatgag
tgtagcatgcttataatggatgaggctgataagcttctgtcaccagagttccaaccttct
atcgagcagttaattcgctttatgcctgtaaaccgccagattcttatgttctcagctaca
tttcctgttacagtaaaagatttcaaagatcgatatctgagaaaaccctatatcatcaac
cttatggatgagcttaccctcaagggtataacccagttctatgcttttgttgaagaaaga
cagaaagttcactgcctcaacacccttttttcaaagcttcaaataaaccagtctattatt
ttttgcaattctgtgaatcgggtggaacttcttgccaagaaaattacggaacttggctat
tcttgcttttacattcatgctaagatgcttcaggatcaccgcaacagagtatttcacgac
ttccgtaatggtgcctgcaggaatcttgtttgcacagacttgtttacaagagggatagat
atccaggctgtcaatgttgtaatcaattttgattttcctaagaattcagaaacatattta
cacagggttgggcgatctggaagatttggacatcttggtttagctgtgaatctcatcacc
tatgaggaccgtttcaatttgtataggattgaacaagaattaggaacagaaatcaagcag
ataccaccacaaattgacctggccgtatactgtcagtga
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