Salvia splendens (scarlet sage): 121762785
Help
Entry
121762785 CDS
T07627
Name
(RefSeq) probable rhamnogalacturonate lyase B isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
sspl
Salvia splendens (scarlet sage)
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
121762785
Enzymes [BR:
sspl01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
121762785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
Motif
Other DBs
NCBI-GeneID:
121762785
NCBI-ProteinID:
XP_042014710
LinkDB
All DBs
Position
13:3294136..3301017
Genome browser
AA seq
673 aa
AA seq
DB search
MLSMSCFVKHRFSALYIITFCILSLRKSSGNGLLQLEVQQDYVVLDNGLLQLTFTKPGGH
LICIRYNGLDNLLELHNPLLNGGFWDLNWSKPGTSGTRGEFDVANGTDFQVVVQNEEQVE
LSFTRKWDASMLGQYAPLSIDKRFIMLCGSSGFYSYAIYQRDETMPAFYLNEARIALMLN
IEKFVYMAMSDDRQRRLPRPEDRVPPRGRELAFPEAVLLVDPIEPEFKGEVDDKYQYSCE
NKDNKVHGFICTDPTIGLWQISPSNEFRTGGPIKQDLTSHVNPTTLAMFVSTHYGGEDLV
VKFGDGEEWKKVFGPVFIYLNSVSDYTNDSNAFLWSDAKDQMKKEVEKWPYSFPVSEDFL
HVDQRGSVCGRLFAQDRYISEGKIAAKGAFVGLAPPGKDGSFQKEAKGYQFWVNADDDGY
FKITNIRPGVYNIYAWVPGFIGDYRCDKDIVVAPGSSIDLGDLVYFPPRNGATLWEIGIP
DRSAAEFYVPDPDPMYINKLLVNLPSHRFRQYGLWQRYADLYPNQDLVYTIGTSDYKKDW
FYAQVTRKIGESAYKATTWQIKFELDEIAESGKYTLRIALASATFSILEVRVNKNGLGEA
LFSSGLIGSDNTITRHGIHGLYWQFNVEMETSLFNEGDNTIYLTQARNFSALHGVMYDYV
RLEAPSFTSNKLA
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgctctctatgagctgttttgtgaagcatcggttctctgcattatacattatcaccttt
tgcattttaagcttgcggaaatcatcgggcaatgggctacttcaattagaggttcagcaa
gattatgtggtgttagataatggattgctccaacttaccttcacaaaaccaggaggccat
ctcatttgcatacgctacaatggactcgacaacttgcttgagctccacaatccactgcta
aatggagggttttgggaccttaattggagcaaacctggcacttcaggcactcgaggagaa
tttgatgttgctaatggaacagatttccaagttgtggtacaaaatgaggaacaagtagag
ctatccttcactagaaaatgggatgcttccatgctaggacagtatgcccctttgtctata
gacaaaaggttcataatgctgtgcggctcgtctggtttctactcgtacgccatctatcaa
cgcgatgagaccatgccagcgttctacttgaacgaggcccggatcgccctcatgctcaac
atagaaaagtttgtgtacatggccatgtcagacgacagacagaggcgtctgccacggccc
gaggaccgtgtccctccacgggggagggagttggcattccctgaagcagttctcctagtt
gatccaatagagccagaattcaaaggagaagtggatgataaataccaatactcatgtgaa
aataaagacaacaaggtgcatggattcatatgcactgatcccactatagggctgtggcaa
atcagcccaagcaatgagttcaggactggagggcctatcaaacaggacctcacttctcat
gtcaacccgaccacattggccatgttcgtgagcactcactacggaggggaggatctagtg
gtgaagttcggagacggggaagagtggaagaaagtttttggaccagtttttatatacctt
aactcagtgtctgattatacaaatgatagtaatgcttttttgtggagtgatgctaaagac
cagatgaagaaagaagttgagaaatggccatatagcttccctgtttcagaagatttctta
catgttgatcaaagagggagtgtttgtggtagattatttgctcaagacaggtacatttct
gaggggaaaatagcagcaaagggtgcttttgtggggctggctccaccaggaaaagatgga
tcatttcaaaaggaagcaaaaggataccaattctgggtaaatgcagatgatgatggttat
ttcaaaattaccaatattaggcctggagtttacaatatctatgcatgggtcccaggcttc
attggtgattatagatgtgacaaagatatagttgtggcaccaggcagttcaatagatctg
ggcgatcttgtgtatttccctccaagaaatggagcaacactatgggaaatcggcatcccg
gatcgatctgcagccgagttctacgttcctgaccccgaccctatgtatatcaacaagcta
cttgtaaatctcccttcacacaggtttaggcagtatgggttatggcagaggtatgcagat
ttgtacccaaatcaagacttggtttacactattggcactagtgattacaagaaagattgg
ttttatgctcaagttacaagaaaaattggagagagtgcatataaagcaacaacgtggcag
ataaagttcgaattggacgagatcgcagagagtggtaaatacacactgcggatcgctcta
gcatctgcaactttctccatactagaggtgagggtgaacaagaatgggctaggcgaggcg
ttgttttcaagcggattaattggaagcgacaacacaataacaaggcatgggattcatggg
ctttattggcaattcaatgtggagatggaaacatctcttttcaacgaaggagataacaca
atatacctcacacaagctagaaatttcagtgctttgcatggagtcatgtatgattatgtt
cgacttgaggctccttctttcacctccaacaaactggcttga
DBGET
integrated database retrieval system
