Salvia splendens (scarlet sage): 121762879
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Entry
121762879 CDS
T07627
Name
(RefSeq) U3 small nucleolar RNA-associated protein 21 homolog
KO
K14554
U3 small nucleolar RNA-associated protein 21
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121762879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sspl03009
]
121762879
Ribosome biogenesis [BR:
sspl03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
121762879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Utp21
WD40
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_Vps41
Beta-prop_RIG_2nd
Beta-prop_EML
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
NBCH_WD40
WDR90_beta-prop_4th
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_IFT140_1st
B-prop_COPA_B_2nd
Cytochrom_D1
Utp12
VID27
Motif
Other DBs
NCBI-GeneID:
121762879
NCBI-ProteinID:
XP_042014829
LinkDB
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Position
13:5262113..5267324
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AA seq
626 aa
AA seq
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MSSSADNSIKMWIFDTSHGDPRLLRFRSGHSAPPQCISFYSNGRHVLSAGKDRAFRLFSV
SQDQQSRELSQGHVLKKAKTLKLKETEIKLKPVIAFDVAEIRERDWCNVVTCHMDTAQAF
VWRLQNFVISKNILEPCTQNPTPVKACAISACGNFAVVGTAAGWIERFNLQSGFRRGSYI
DMTEGRSCAHNGEVAGVACDSTNTVMISAGLNGDIKVWNFKGQDLKSRWEIGCPVVKIVY
HRYNGLLATVADDLVIHLFDVVALRMVRKFEGHTDRITDVCFSEDGKWLLTSSMDGTLRI
WDVILARQIDAIHVDVSVTALSLSPNMDVLATTHVDQNGVYLWVNQAMFSAPSKSGSYGS
GKEIVSVNLPSSSTGNFLDSNSNEADKPSPQEVLDVPLSTIEHEQIPDLVTLSMLPKSQW
QSLINLDIIKARNKPIEPPKKPEKAPFFLPSILSLSGEIVFKPRESAEGDKDSKAGETEN
IRIKADIPASQFLQFLQQSAEENDFAAFADYIKGLSSSTLDMELRMLQIVEEDDCDTESS
IRPEVQFIGLLLDYYILEISRRNNFEFIQAMIRLFLKIHGESVRSQPILQKKAEKLLHIQ
SAIWQKIDKLFQSTRCMVTFLCTSQF
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgagctcatcagctgacaactctataaaaatgtggatttttgatactagtcacggggat
cctcgtcttctacgatttagaagtgggcatagtgctcctccacagtgtatcagtttctat
tctaatggacgacacgtcctctctgctggcaaggatcgtgcctttcggctgttctctgtc
agccaggatcaacagagcagagaactttctcaaggccatgtattaaaaaaagcaaaaaca
ctcaagctgaaggaaactgaaataaaactcaagcctgtaattgcatttgatgttgctgaa
atcagggaacgtgattggtgcaatgtggttacatgtcatatggatactgctcaagccttt
gtctggaggcttcaaaattttgtgattagtaagaacatcttggagccatgcacacagaac
ccaacaccagttaaggcatgtgccatcagtgcatgtggtaattttgcagttgtagggact
gcggctggttggattgaacgatttaacctgcagtcaggttttagacgaggcagttacatt
gatatgacagaaggcaggtcctgcgcccacaatggtgaagtggctggtgtcgcttgtgat
tcaaccaatactgttatgataagtgctggtttgaatggcgatataaaagtttggaacttt
aaaggacaggatttgaagtccagatgggaaataggttgtccagttgtcaagattgtctat
caccgatacaatggtcttttggctacagtagcagatgacttagttatccatttatttgat
gttgttgctctgagaatggttcgtaagtttgaaggtcacacagatcgtataactgatgtg
tgctttagtgaggatggtaaatggcttttgacttccagcatggatgggactctcaggatt
tgggatgtaatcctggctagacaaatagatgctatacatgttgatgtgtctgtgacagca
ctgtctctatccccaaatatggatgtcttagctacaacgcatgttgatcaaaatggtgtt
tacttgtgggtgaatcaggcaatgttttctgcccctagtaaatctggttcctatgggagt
ggcaaagaaattgtgagtgtcaatctaccgtctagctcaactgggaatttccttgattca
aactccaatgaagctgacaagccaagtcctcaggaagtgctagatgttcctctctccaca
attgaacatgaacagataccagatcttgtcaccctctccatgttgcctaagagtcagtgg
caaagcttaatcaatctagatatcataaaagctaggaacaaaccaattgagccaccaaaa
aagcctgaaaaggccccttttttcttgccatcaattctgtccctgtctggagagattgtg
tttaaacctagagaatctgctgaaggtgataaggattcaaaagctggtgaaacagagaac
ataaggatcaaagctgacattccagcatctcagttcttacaattccttcaacaatctgca
gaggaaaatgacttcgcagcctttgcggattatatcaaaggtttatcatcttcgactttg
gatatggaacttaggatgcttcagattgtagaagaggatgactgtgacaccgagtccagc
atcagaccagaagtccaattcattggacttctgctagattattatatactagaaatttca
cgcagaaacaattttgagtttatacaggctatgatccggttattcttaaagatccacggt
gaaagcgtacgcagccaacctattttacagaaaaaagcagagaagcttcttcatattcag
tctgcaatatggcaaaagatagataagttgtttcagagcacgaggtgtatggttacattt
ctctgcacctcacaattttga
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