Salvia splendens (scarlet sage): 121763054
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Entry
121763054 CDS
T07627
Name
(RefSeq) protein DAMAGED DNA-BINDING 2-like isoform X1
KO
K10140
DNA damage-binding protein 2
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03420
Nucleotide excision repair
sspl04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121763054
09124 Replication and repair
03420 Nucleotide excision repair
121763054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sspl04121
]
121763054
03400 DNA repair and recombination proteins [BR:
sspl03400
]
121763054
Ubiquitin system [BR:
sspl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
121763054
DNA repair and recombination proteins [BR:
sspl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
121763054
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_Prp19
WD40
Beta-prop_EIPR1
Beta-prop_EML
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
WDR55
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
WD_LRWD1
NBCH_WD40
Beta-prop_IFT140_1st
PQQ_3
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
121763054
NCBI-ProteinID:
XP_042015039
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Position
13:complement(22255594..22259934)
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AA seq
551 aa
AA seq
DB search
MAPQTRRGPSFPKIVIERDSDTEDSSEEEDFDDEVQKLAGEASDDEQAEEKDDASTSTKR
KREPITISLKRVCKVCKQSGHEAGFRGATYIDCPMKPCFLCKLPGHTTMTCPHKVATEFG
VSPAPLKNSHNSLKYLFDRQLRCHVPKMKPAFVIPNKVNCAVIRYHSRRVTCLEFHPTKN
NILISGDKKGQLGVWDYEKVHERIVYGNIHSCILNNMKYNPLNDGTVYGASSDGTVSCTD
LETGISSSLVNLNPTGWQGPSSWKMLYGLDLNSDKGILLAADNFGLLYMIDARSNNVTGK
PILIHKKKSKVTGLHCHPLQPDLLLSCGNDHFARIWDIRRLEDGSSIYNLQHKRVVNSAY
FSPQSGSKILTTSQDNRIRVWDSIFGDLDSPSREIVHSQDFNRHLTPFRAEWDPKDISES
LVVVGRYISENYNGVALHPIDFIDITNGQLVAEVMDPNIMTITPVNKLHPRDDVLASGSS
RSIFIWKPQENTELEREEVANRIIICGKAEKSRKGKLDDDSGDDDMFDSKKNSKTKKIHV
KSKVHGGKRKC
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgcagacgaggaggggtccttcgttccccaaaatcgtgattgagagagattcc
gacaccgaagatagttcagaagaagaagattttgatgatgaagtccagaaactcgccgga
gaggcgtcggatgatgagcaagcagaggaaaaggatgatgcatcgacgtcgacgaagagg
aaaagagagcctatcactatcagcctcaagagagtttgcaaagtgtgtaagcagtcaggt
catgaagccgggtttcgtggcgccacctacattgactgccctatgaagccatgttttctt
tgcaaactgcctgggcataccacgatgacttgccctcacaaagtggctactgagtttggg
gtttcgcctgcacccttgaagaactctcataattcgttgaagtatcttttcgaccgccaa
cttaggtgtcatgtgcctaagatgaagccagcatttgtgattccgaataaagttaactgt
gccgtaattagatatcatagcagacgtgttacatgtttggagttccacccgacaaagaac
aacattcttatatctggggacaagaaaggacagcttggagtttgggattatgagaaagtg
cacgagaggatagtatatggaaacatacatagctgcatattgaacaacatgaagtataat
ccattaaatgatggaaccgtctatggtgcctcatcagatggtactgtcagctgcactgat
ttagaaactggaatttcatcatcattggtcaacctcaatcctactgggtggcaggggcct
agtagttggaagatgctctatggtctggatctgaactctgataaaggaattttgcttgct
gcagataattttgggcttctctatatgattgatgcgcgctccaacaatgtgacaggaaag
cctatactgattcacaagaaaaaaagcaaagttactggtttacactgtcatcctctccaa
ccagatctccttctaagttgtggcaatgatcacttcgctcgtatatgggacattcggcga
cttgaagatggctcttctatttataatcttcaacacaagcgtgttgttaattcagcctat
ttttctccacaaagcggtagcaaaatactgactacgtctcaggacaaccggattcgtgta
tgggattccatctttggagatttggactctccaagccgagagattgtacacagtcaggat
ttcaatcggcatttgactccttttcgagctgaatgggatccaaaggatatctcagagtcc
ctcgttgttgttgggcgttacataagtgaaaactataatggagtagccttacatcccata
gattttattgacatcactaatggtcagttagtcgcggaggtcatggatccaaatataatg
acaatcactcctgtaaataagctacatccacgcgatgatgtcctggcatctggtagctcc
aggtctatcttcatctggaagccccaagaaaacactgagctagagcgcgaagaggttgct
aatcggatcattatctgcgggaaggctgaaaaatcacggaaagggaagctcgatgatgac
agtggtgatgatgacatgtttgactccaagaagaactcgaagacgaagaaaattcatgta
aaatctaaggtacatggtggtaagaggaaatgctga
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