Salvia splendens (scarlet sage): 121765016
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Entry
121765016 CDS
T07627
Name
(RefSeq) uncharacterized protein LOC121765016
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121765016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspl03021
]
121765016
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121765016
Transcription machinery [BR:
sspl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121765016
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
121765016
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf-C2H2
Motif
Other DBs
NCBI-GeneID:
121765016
NCBI-ProteinID:
XP_042016991
LinkDB
All DBs
Position
14:complement(23956698..23965243)
Genome browser
AA seq
978 aa
AA seq
DB search
MESTRRSFDRSLSKEPGPKKPRLTEDPTAADRISNGRAGFIQRPAISNPAVGGGPRTQRD
RDSESSDSMRGSFHHQTGAQLHQELVTQYKTALAELTFNSKPIITNLTIIAGESLPAAKA
IAATICNNIIEVPSDQKLPSLYLLDSIVKNIGRDYIKFFASRLPEVFCKAYRQVDPSIHQ
GMRHLFGTWKGVFPPQSLQLIERELGFTSAATVSAASRTESQAQRPAHSIHVNPKYLEAR
QRLQTSRSIQQHQRDQVNNPVREKSSGVEFADDYGSGVLGRSGLGSGRMTEHLKDPGYDR
PWDESDSDLIGMANQKNGFGLKHGLESFVAHESVHFDSDLQPKKNISSRNTNGMRENWKD
SEEEEYTWSEMNSRPTIADAPTKNQWAPANYDRVDFESHLPGHQNIHDIGPRDDDELSID
SISMDRSQVASGAQVPLWSQKLHPPEGSMHLGSGKTLSVQSEGFATGLNSTKSTMGKTHS
QSQLGQSHIGMPSFKFPMNETPLSKGSMSQERQTLAPPSSARSLVHQRPPSPSVASHGQS
QFLNNSSERNPTATGPPKDPRRRPGQKNTNYPDQVSTDPPMPTRGVYQASKQKPQPTNLR
STSTMAPPTQQRKHAPAARPRSVEVSQFETSVPEHRLLSSQISGSGSRSSMGNSSSDQSN
PFTVDSPGKSITSSLTGSLNNPFSSQETRPGSSVKMPSAVNSTSNPFSSLLSSLVAKGLI
SSSKSDPVLSTSPKTDQPMDKVPETAKPSSAPVSSVPVTLSKPIVSVSDKPSSSEATLNT
SDRLAPSTDKIKHLIGFDFKPDVVRKFHPDVISDLLCNLPHLCTICGLKLKFQEQLDKHM
EWHASKVPEDDPLSKISRSWYTDVVDWVSGVGNAHPQSSPLDIGGSGDILESNEPLVPAD
ESQCACILCGELFEDFYDQENDEWMFKGALYLTIPSPNEGLGATSDTLVLSPIVHSDCIS
EDTMNDLGLAYDVKMEKE
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atggagagcacacgaagatcgttcgacagatctctttcgaaggaaccgggaccgaagaaa
cctaggcttacagaggaccctactgcagcggatcgaatctccaatggccgtgccggattt
atccaacgtcctgctatttcgaaccctgctgttggcggaggcccaaggactcagagggac
cgagactcggaaagtagcgattctatgcgggggtcctttcatcaccagacaggggcgcag
ttgcatcaggaactggtgactcagtacaagaccgcgctggctgagctgactttcaattcg
aagcccatcataaccaacctgacaattattgctggagagagtttgcctgcggccaaggcc
attgcagctactatctgcaacaatattattgaggttcctagcgatcaaaaactgccttct
ctgtatctattagacagcattgtgaaaaatattgggagagattacataaaattctttgct
tccagactaccggaggtcttctgtaaggcatatagacaggttgatccttcaatacaccaa
ggtatgcggcacctctttggcacctggaagggagtcttccccccacagtcgcttcagctg
attgagagggaacttggattcacctctgcagctactgtatcagcagcctctagaactgaa
tcacaagcccaacgtcctgcgcatagcattcatgtaaaccctaagtatttggaggcaagg
cagcgactgcaaaccagcaggtctatccagcaacatcaaagagatcaagtaaataatcca
gttcgtgagaaaagttctggtgtagaatttgcagatgattatggttctggtgtcttgggg
cgttcaggcttgggaagtggaaggatgacagaacaccttaaagatcctggatatgacagg
ccctgggatgaatcagacagtgatttgattgggatggcgaatcaaaagaatggttttggt
ctgaaacatggattagaaagctttgttgcccacgaatccgtacattttgactcagatcta
cagcctaagaaaaatatatccagtaggaacacaaatgggatgagggagaactggaaagac
tctgaggaggaggagtatacctggagtgagatgaactctagacctactatagctgatgct
ccaactaaaaatcaatgggccccagccaattatgatagagtggattttgaaagccatctc
ccaggacatcaaaatatacatgatattgggccaagggatgatgatgaactttcaattgat
tccatctccatggatcgcagccaagtggcttcgggggctcaagtgccattgtggtcacaa
aagctgcatccaccagaagggagtatgcatttagggagtggtaaaaccttatcagttcag
tctgagggatttgcaactgggttgaatagcaccaaaagtacaatgggcaagacccattct
cagtcacagctcggtcaatctcatattggaatgccaagctttaagttcccgatgaatgaa
acacctttgtcgaaaggatcaatgagtcaagagcggcagactcttgcccctccatcctca
gcacgatcattagtgcatcaacgtcctccgtcaccttctgttgcttctcatggccagagt
caatttctaaacaattcttctgagcgcaaccccacagctacaggtcctcctaaagatcct
cgaaggcgtccagggcaaaagaacacgaactatcctgaccaagtttcaacggatcctcct
atgccaactcggggagtttatcaggcaagcaaacagaagccgcaacctacaaatctacgg
tctacgtccactatggcacctcccactcaacaaaggaaacatgctcctgctgctcgacca
agaagtgttgaagtctctcaatttgagacttctgtgcctgaacaccgcttgctatcatca
caaatttcaggctctggaagccgctcgtcgatggggaattcatcttccgaccaatcgaat
ccttttactgttgattcccctggaaaatccattactagttcactaacaggtagcttaaat
aaccctttcagttctcaagaaaccaggcccggttcatctgtgaagatgccaagtgcagtt
aattccacctcaaatcctttttccagtctcttaagctcattggttgcaaaaggcctgata
tcttcttcgaagtctgatccagtgttgtccacatcacctaaaactgatcaacctatggac
aaagttccagagactgccaaacctagttcagctccagtttcttctgttccagtcacattg
tcaaaacctattgtgtctgtgagtgacaagccatcttcatctgaggctacacttaatact
tctgacagattggctccctcaacagacaagataaaacatcttattggttttgacttcaag
ccagatgtagtccgtaagttccatccagatgtgattagtgatcttctctgtaatcttcca
catctttgtaccatatgtggtcttaaacttaaatttcaagaacagcttgacaaacacatg
gaatggcatgcatcaaaggttcctgaggatgaccccttgagtaagatttcaaggagttgg
tacacagatgtagttgattgggtttcaggagttggtaatgctcatcctcaaagtagtcct
ttggatattggaggttcaggtgatatactagaaagtaatgagccattggtcccagcagat
gagagtcaatgtgcatgtatattgtgtggtgagctgtttgaagatttctacgatcaagaa
aacgatgagtggatgtttaaaggagctctttacttaaccatcccatccccgaacgaggga
cttggagccacaagtgatactttggttcttagtccgatagtccattctgactgtatatca
gaagacactatgaatgacttgggactagcttatgatgtcaaaatggaaaaggaataa
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