Salvia splendens (scarlet sage): 121765249
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Entry
121765249 CDS
T07627
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121765249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121765249
03036 Chromosome and associated proteins [BR:
sspl03036
]
121765249
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121765249
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
121765249
mRNA degradation factors
5'-3' decay
Decapping complex
121765249
Chromosome and associated proteins [BR:
sspl03036
]
Eukaryotic type
Gene silencing
piRNA pathway
121765249
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Aldedh
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
121765249
NCBI-ProteinID:
XP_042017257
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All DBs
Position
14:complement(3137539..3144877)
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AA seq
495 aa
AA seq
DB search
MSSRARYPPPGMGGGRGGYGGMNPNAGPNPNFQPRNPMHQYVQRSPAPSNQNQQLFQNQQ
QQQQWLRRNQLPPTDSAVDEVEKTVQSEAVDSSSQDWKASLKLPPRDNRYRTEDVTATKG
NEFEDYFLKRELLMGIYEKGFESPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPAL
EKIDQDKNVIQVVILVPTRELALQTSQVCKELGKHLQIQVMATTGGTSLKDDIMRLYQPV
HLLVGTPGRILDLANKNVCVLNECSMLIMDEADKLLSPEFQPSIEQLIRFMPVNRQILMF
SATFPVTVKDFKDRYLRKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQ
SIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTR
GIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTE
IKQIPPQIDQAVYCQ
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgagttcgcgagcgagatacccaccgccgggaatgggtggcggcagaggcggatacggc
ggaatgaacccgaatgccggaccaaaccctaatttccagccacgaaaccctatgcaccag
tatgtgcaaagaagtccagctcctagtaatcagaatcaacaattgtttcagaatcagcag
cagcagcagcaatggctgcgaagaaatcagctgcctcctaccgattccgccgtcgacgag
gttgaaaagaccgtacagtcggaagccgtcgattctagttcacaagattggaaggcaagc
ttgaagttaccaccacgggacaatcgttacagaactgaggatgttacagctaccaaagga
aatgaatttgaagactactttttaaagcgcgaactgctaatggggatatatgaaaagggt
tttgagagcccgtctccgatccaggaagagagtattccaattgctctcactggaagtgat
attttggctagggcaaaaaatggaactggaaaaactgcagcgttttgcatcccagccttg
gagaagattgatcaagataaaaatgttattcaagttgttattcttgtcccaacaagagaa
ttggctcttcaaacatcgcaagtttgtaaagaactcgggaagcacttacaaattcaagtc
atggcaactactggtggaactagcttgaaagatgacataatgcgtctttatcaaccagtg
catttacttgttgggacaccaggaagaattcttgatcttgccaacaagaatgtctgtgtt
ctgaatgagtgcagcatgcttataatggatgaggctgataagcttctgtcgccagagttc
caaccttctatcgagcagttaattcgctttatgcctgtaaaccgccagattcttatgttc
tcagctacatttcctgttacagtaaaagacttcaaagaccgatatctgagaaaaccctat
atcatcaaccttatggatgagcttaccctcaagggtataacccaattctatgcttttgtt
gaagaaagacagaaagttcactgcctcaacacccttttttcaaagcttcaaatcaaccag
tctattattttttgcaattctgtgaatcgggtggaacttcttgccaagaaaattacggaa
cttggctattcttgcttttacattcatgctaagatgcttcaggatcaccgcaaccgagta
tttcacgacttccgtaatggtgcctgcaggaatcttgtttgcacagacttgtttacaaga
gggatagatatccaggccgtcaatgttgtaatcaattttgattttcctaagaattcagaa
acatatttacacagggttgggcgatctggaagatttggacaccttggtttagctgtgaat
ctcatcacctatgaggaccgtttcaatttgtataggattgaacaagaattaggaacagaa
atcaagcagatcccaccacaaattgaccaggccgtatactgtcagtga
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