Salvia splendens (scarlet sage): 121767442
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Entry
121767442 CDS
T07627
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121767442
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121767442
Spliceosome [BR:
sspl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
121767442
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_Gbeta
WD40_CDC20-Fz
EIF3I
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_Aladin
Beta-prop_TEP1_C
PRP4
NBCH_WD40
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_WDR41
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_Nup120_160
WD40_like
Tricorn_2nd
Nbas_N
Motif
Other DBs
NCBI-GeneID:
121767442
NCBI-ProteinID:
XP_042019639
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Position
15:complement(13511914..13515629)
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AA seq
573 aa
AA seq
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MDIDEENTVPTSAADSTSPAGDEPMDSAIDAMSLQAVQPVNAPTAPTTVIPPIAPIPTVP
HSVPRPLAPIPIRPPVHRPPVPKGESRTSDSDSDEEGSGVNQTAAGQKYEISEESKLARE
RQEKAVQELLMKRRTAALAVPTNDNAVRARLRRLGEPITLFGEREMERRDRLRALMAKLD
SEGQLEKLMKAHEDEEAGSTAAPSGPEEDIQYPFFTEGTQSLLEARREITKYSIVKSALR
LHRARIKRDDPDEDLDAEVDWSLKQAANLELKSSEMGDVRPLSGCSISHDGQMLATCSLS
GVAKVWSMPEVNKVSALKGHTERATDVAFSPINYQLATASADRTARLWNLDGTALRTFEG
HLDRLARIAFHPSGKYLGTASFDKTWRLWDVETGEELLLQEGHSRSVYGLSFHHDGSLVA
SCGLDSLARVWDLRSGRSILALEGHVKPVLGASFSPNGYHLATGGEDNTCRIWDLRKRKS
LYIIPAHSNLLSQVKFEPQEGYFLVTASYDTTAKVWSSRDFRPVKTLSGHESKITSLDVV
ADGQYITTVSHDRTIKLWSTKDSERERKEMEVD
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atggacatagatgaggagaatactgtccctacctcagctgcagattccacctcccctgct
ggggacgaacccatggattctgctattgatgcaatgtcacttcaagcggttcagcctgta
aatgcacccactgctccaaccactgttatacctcctattgccccaatacctactgtacct
cactcggttccaagaccattggctccaatacctatccgccctccagttcataggcctcct
gtaccaaagggagagtcaagaactagtgattcggattctgatgaggaagggtcaggtgtg
aatcagactgctgctggtcagaaatacgagatctcagaagaaagcaaactggccagggag
agacaggagaaagcagtacaggaacttctgatgaagcgtcgcactgctgccttggcagtg
cccactaatgataatgctgtccgagctcggcttcgtcgacttggtgaacctataactctc
tttggagagagggagatggagaggcgtgatcgtctacgggcacttatggcaaaactcgat
tctgaaggccagttggaaaagctgatgaaagctcatgaggatgaagaagctggaagcact
gcggcaccttctggacctgaagaagatattcagtatccctttttcactgaaggtactcaa
tcactattagaagctcggcgagagattacaaagtattctattgtgaagtcagcactgcgc
ctccatcgtgcaaggataaaaagggatgaccctgatgaagatttggatgctgaggtagat
tggtctttgaagcaggcggcaaatctagaactaaaaagcagtgagatgggtgatgttcga
cctctttcaggatgctcaatttcacatgacgggcagatgcttgccacctgttctctaagt
ggagttgcaaaggtctggagcatgccagaagtaaataaggtttcagctctaaaagggcat
accgaacgagctactgatgttgcattctctccaatcaactaccaattggctactgcctct
gctgacaggactgctagactatggaatctggacgggactgccctgagaacatttgagggc
catttagatcgccttgctaggatagccttccatccatcaggaaagtatttgggtactgct
agctttgacaagacttggagattatgggatgtagagaccggtgaagagttgcttctccaa
gaaggtcatagtaggagtgtttatggattatctttccaccatgatggctccttagtagct
tcttgtggactggattctcttgctcgtgtgtgggacctgagatctggacgaagtattctt
gctttggaaggccatgtcaaacctgttcttggtgccagtttttctcccaatgggtatcat
ctggctactggcggtgaagacaacacttgcagaatctgggatttgaggaagagaaaatct
ttgtatataatacctgctcactccaacctgctttctcaagtcaaatttgaaccccaggaa
ggatactttttagttacagcttcatatgatacgactgctaaggtttggtcgtcgagagat
ttccggcctgttaagacattatcaggccatgaatcaaagattacgtcgctggatgttgtt
gcagatggacaatacattacaaccgtctcacacgatcgaacaattaagctatggtcgact
aaagactctgagagagagaggaaggaaatggaagttgactga
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