Salvia splendens (scarlet sage): 121768088
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Entry
121768088 CDS
T07627
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DEAH11, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121768088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121768088
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121768088
Spliceosome [BR:
sspl03041
]
Complex C
Other components
Step II factors
121768088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
RRM_DEAH11
KH_DEAH11_2nd
KH_DEAH11
KH_DEAH11_1st
Helicase_C
IBR
OB_NTP_bind
DEAD
IBR_1
HA2_C
AAA_19
AAA_22
IBR_2
HA2_N
Motif
Other DBs
NCBI-GeneID:
121768088
NCBI-ProteinID:
XP_042020377
LinkDB
All DBs
Position
15:29255755..29260958
Genome browser
AA seq
1513 aa
AA seq
DB search
MSCVRKGRFWWVRLPLYPTGLRNSEMALGLLRRIYMLMMRECRRLDDGLPIYAHRREIMK
QIYCXQVTVLIGETGSGKSKQLVQFLADSGICGDGAIICTDPRKLAAITLAERVKDESFG
CYDDTPVVCHQSYSSLQEFESNVVFATDHCLLQHYISDNQLSMVSCIIVDEAHERSLNTD
LLLALLKTLLCQRPCLRLIIMSATVDADRFSDYFFGCRTLHVSGRNFPVVKYEPCHSQVS
KLMPSYVHDVLTTVVKINKTEREGTILAFLTSQSEVEWACENFQASYVVALPLHGKLSYE
EQHKVFLTYPGKRKVIFSTNVSETSLTIPGVKYVVDPGMAKESMYEPATGMNILKVSRIS
QSSAKQRAGCAGRTEPGTCYRLYSEDDFKSMLPHQEPEIRKVHLGVAILKIVALGVKDLQ
EFDFVDAPSASSIDMDVRNLVQLGAIVLKNDAYELTSEGKDIVKLSIEPRLGKIILQSFR
QRLGKEGLVLAAVMANSSSIFCRVGTVDAKLKSDCLKVMFCHPSGDLFTFLGVYREWEAV
PREKRNTWCWENSINAKTLRRCQDTVMEMEACLKNELNIIVPHYWLWNGEHEKSLKKVTL
SSLPGNVAMYSGHDQHGYEVALTKKHVQLHPACSLFNFDQRPAWVVFLEILSVSNEYLAC
VTACDFDCFPTLSPSLPFDFLAMNRQRLQKRVLSGFGSVQLKRFCGKANSNVRFLESKVR
ESCADERIGVVVDVDQNEVLVYASSQHIERVMGLVVEALEYEKKLLRNECIEEFMYGPKV
LNSVALFGAGAEIKHLELENRCLSVDIYHSNVSALDRKELLLFIESFTSGLVCSVSRFYV
SSQENEEKDKWGRVTFFTPDAAEKASALNDVEFSGGLLRVVPCIKNQDSDLRMMSSNRIK
AKISWPRRRSKGIAFVKCNPDDVEAMVNDLANLVIGDTRVWCTPSAKFRDSIRITGLDRE
LSQEDIRPVIRASTSRQITDFFLLLENANDDLLPPPPACEDAILREISSFMPRRIQGAPV
NVKVFPPEAKDSIMRAQIDFDGNLYLEAARALEHIDRKVLPGCGSWQKIVCRPLFNGSVY
CPPSVYHVIENEFHHPLRRLQRDPRYQGVEWCMEKTNNGGYRVKISASATRLVFELEKSL
SELVGGTIIHHPDITPAVLEILFSQDGVMLMKSVEGGTGTHIFFDKQKMTLRVYGPPEKM
EYAQQSLVKGLLTLYDSRQLEIRLCNGVFPSDMMKRVVERFGPDLNGLRDKVPEVELSLN
ARRHAISVKGSRALMQEVESILRDLAQPSALQSPENDHDSACFLCLCEVEPCDSHMLEDC
HHKACKSCLLRQFESVIQSRGRFPLLCSKWDCEAKIAVADLRSLLCKEKLDELFEASLGA
YVEASGGALQFCPSTDCPSVYRAAGPSGPAAAFKCGVCFMETCTKCHVEYHPLLSCERYR
ELKVDPDVSLREWCIGKDNVKTCPGCGFTVEKVDGCNHVSCRCGRHVCWVCLDSFDRAED
CTSHISFGHPNML
NT seq
4542 nt
NT seq
+upstream
nt +downstream
nt
atgagctgtgtgagaaaagggaggttttggtgggtgagactacctttatatccaacagga
ttgaggaattcagaaatggcattaggtctattgaggaggatttatatgctgatgatgagg
gaatgcaggaggctcgatgacggactgcctatttatgcccatcgccgcgagatcatgaag
cagatatactgctaacaggtgacagtacttataggtgagaccggttcaggaaagagcaag
cagttggttcagtttcttgctgattctggaatatgtggagacggtgccattatttgcacg
gatccaagaaaacttgctgcaatcacattggcggagagggtgaaagatgaaagctttggg
tgctatgatgatactccagttgtgtgtcaccagtcatattcatcgcttcaggagtttgag
tccaacgtggtgtttgctactgatcattgcctgttgcagcactacataagcgacaatcaa
ctatccatggtatcttgcattattgttgacgaggctcatgaaaggagcttgaacacagat
ctccttctggctttgctcaagactctactctgtcagaggccctgtctcaggcttatcatc
atgtctgctaccgtggatgcagaccgattctctgattacttttttggctgtaggaccttg
catgtgtctgggagaaacttccctgttgttaaatatgaaccctgccattctcaagtgtct
aaattaatgccgtcgtatgtacatgatgttctaactacagtagtgaagatcaacaagact
gagagggaaggcactattctcgcattcttgacgtcacagagtgaagtagaatgggcttgt
gagaatttccaagcttcgtacgttgtagcattgcccttacatggaaaactttcatatgaa
gaacagcataaagtgtttctaacctatccaggtaaaagaaaagtgatattttccaccaat
gtttctgagacatcactgacaatacccggcgtcaagtatgtggttgaccctggaatggca
aaagagagcatgtatgaacctgctacagggatgaacattctcaaggttagcagaatcagt
cagagctctgctaaacaacgagctggttgtgctgggagaacagagcctgggacatgctat
agactctactctgaagatgattttaaatcaatgctaccacaccaggaaccagaaattcgc
aaggtgcatcttggcgtagcaattttaaaaatcgtggcattgggtgtgaaggatctgcag
gagtttgactttgttgatgcacctagtgccagttccatagatatggatgtcagaaatctt
gttcagctaggagcaattgtgctgaaaaacgatgcgtatgagttaacaagtgaagggaaa
gacatagtgaagttgagtattgagcctcggcttggtaaaataattttacaatccttccgc
cagcggttgggtaaagagggtcttgttcttgctgcagtaatggcaaattctagtagcata
ttttgcagagtcggaacggtggatgctaagttgaaatctgattgcctgaaagtgatgttt
tgccatcctagcggcgatcttttcacatttcttggcgtttacagagagtgggaagctgtt
ccgcgtgaaaagagaaacacttggtgttgggaaaatagcattaatgcaaagacattaagg
agatgccaggacactgttatggaaatggaagcttgccttaaaaatgaattgaatatcatt
gtgccacactattggctttggaatggtgagcatgaaaaaagtttgaaaaaagtaacactc
tcttccttgcctggaaatgtggctatgtactctggccacgatcaacacggttatgaagtg
gcactaacaaagaaacatgtgcagttgcatcctgcgtgttctttgttcaacttcgaccaa
aggccggcctgggtggttttcttggaaatattatctgtgtcaaatgagtatttggcatgt
gttacagcatgtgattttgattgttttccgaccctgtctccttctctaccatttgatttc
ttggcaatgaacaggcaacggttgcagaagagggttctatcagggtttggaagtgttcag
ttaaaaaggttttgtgggaaagctaatagcaatgtgcgctttcttgaatcaaaagtaaga
gagtcgtgtgctgatgaaaggattggtgttgtggttgatgttgaccagaatgaggtgctt
gtgtatgcttcttcacagcatattgagagagtgatgggtttagttgtagaagcattggag
tatgaaaagaagctattgcggaatgagtgtattgaggaatttatgtatggccctaaggtc
ttgaactccgttgctctctttggtgctggtgctgagataaagcatctggaacttgagaac
agatgcctgtctgttgacatatatcattctaatgttagcgcacttgatcggaaagagctt
ctactctttattgagagtttcacttcgggtttggtttgctctgttagcaggttctatgtc
tctagtcaggaaaatgaagagaaggacaagtggggaagggtgacattttttactcctgat
gctgcagagaaggcttctgcgttgaatgatgtcgaatttagtggtggtttgttaagggtc
gttccttgtataaaaaatcaagacagtgatctcagaatgatgtcgtccaatcgtatcaaa
gccaaaatttcgtggcctcgtcggcgcagcaaagggattgcatttgtgaaatgcaatcca
gatgatgtcgaagcaatggtgaatgatctcgccaatctagttattggtgatacgcgtgtt
tggtgtacaccaagtgctaagtttcgagacagcattagaattactgggcttgacagggag
ctttctcaagaagatatacgtcccgtcataagagcttcgacaagtaggcaaatcacggac
ttctttctgttgctagagaatgcaaatgacgatcttctaccaccaccaccggcttgtgag
gatgccattttgcgagaaatttcttccttcatgcctagaaggatccagggtgccccggtt
aacgttaaggtatttccaccagaagcaaaggacagtatcatgagagcccaaattgatttt
gatggaaatttatatttggaggcagccagggccctggagcatatcgaccgaaaagtacta
cctgggtgtggctcgtggcaaaaaattgtatgtcgtccactgtttaatggctctgtgtat
tgccctccctctgtatatcatgttatcgagaacgagtttcatcatcccctcagaaggctt
cagcgtgatccgcgttatcaaggtgtagaatggtgtatggagaaaaccaataatggtggc
taccgagtaaagatatcggctagcgccactagacttgttttcgagttggaaaagtctctg
tcggagctcgttggagggacaattatacatcatccggatataaccccggctgttcttgag
attcttttttcgcaggatggggtaatgcttatgaaatctgttgagggagggactggaacg
catatattcttcgataagcagaaaatgactttgagagtctatggtcccccagaaaagatg
gagtatgcacagcagagtttagtcaaaggtctcctaaccctatatgacagtaggcaactc
gagattcgactttgcaatggagtcttcccttctgatatgatgaagagagttgttgagcgt
ttcgggccggatcttaacggacttagagataaagtgccagaggtggagttgtctttaaat
gcaagacgtcacgctatatctgttaaaggtagcagagcattgatgcaagaagtcgaaagc
atactgcgcgatcttgcacagccaagcgcgttgcaaagcccggagaatgatcatgatagt
gcttgtttcctctgtctatgtgaagtggagccgtgcgattctcacatgcttgaggactgc
catcacaaagcctgcaagtcatgtttgttgaggcagtttgaatctgttatccaaagtcgc
ggacgtttcccgttgctctgttctaaatgggattgcgaggctaaaatcgcggttgctgat
ttgaggtctttgctgtgtaaagagaaactcgatgaacttttcgaggcttcgttgggtgca
tacgtggaagcgagtggaggtgctttgcagttttgcccgtcgaccgactgtccttcagtg
tacagagcagcgggtcccagtggccccgctgcagccttcaaatgcggggtgtgcttcatg
gagacgtgtaccaagtgccacgttgagtaccacccgctcctgtcctgcgagaggtatcgc
gagctgaaagttgatcccgatgtatcgctcagggagtggtgcatagggaaagataacgtg
aagacgtgcccggggtgtgggttcacggttgagaaggtggacgggtgcaaccacgtttcg
tgtaggtgcgggagacatgtttgctgggtatgcttggattcgttcgacagggccgaagac
tgcaccagtcatatcagctttggacacccaaacatgttgtaa
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integrated database retrieval system
