Salvia splendens (scarlet sage): 121768804
Help
Entry
121768804 CDS
T07627
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121768804
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121768804
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121768804
Spliceosome [BR:
sspl03041
]
Complex C
Other components
Step II factors
121768804
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
RRM_DEAH11
KH_DEAH11_2nd
KH_DEAH11
KH_DEAH11_1st
Helicase_C
IBR
OB_NTP_bind
DEAD
IBR_1
HA2_C
AAA_19
AAA_22
RRM_1
zf-RING_UBOX
ABC_tran
HA2_N
AAA_29
Arc_MA
Motif
Other DBs
NCBI-GeneID:
121768804
NCBI-ProteinID:
XP_042021294
LinkDB
All DBs
Position
15:complement(3941794..3953389)
Genome browser
AA seq
1752 aa
AA seq
DB search
MSQSSGYGRRQPPFAARPRHNPQEPPFRRSSYQQHQYRSQFPSNNYDRPPGDIPARPNFI
VQLRPDSQKSNSVKRADVEAVIRKLKFQPQRANFVMSNFNSASLGYEQWSETLATIVQLW
EMKLGDKGFSFVPRLVSYVELPSDRLELNDRLKVLFIEKLKGLKEGELVEKWVKKLGTVM
DEVKRISRILSDKASLRVFNELLKKKEVLVGESTFISNRIEEFRTGIRSIEVHLEDGNKE
ERDFEVLQFVRGKIEWGRIYCLMMRECRRLDDGLPIYARRQAIMKQIHCQQVTVLVGETG
SGKSTQLVQFLADSGICGDGAIICTQPRKLAAITLAERVKEESFGCYDDTSVVCYPSYSS
LQEFESNVVFATDHCLLQHYISDNQLSMISCVVVDEAHERSLNTDLLLALIKTLLCQRPC
LRLIIMSATVDADQFSDYFFGCRTLHVTGRNFPVAVKYEPCHSEVSPASKLMPSYVHDVL
NTVLKINRTESEGTILAFLTSQSEVEWACENFQASYAIALPLHGKLSYEDQHRVFLAYPG
KRKVIFATNVAETSLTIPGVKYVVDPGMVKESMYEPATGMNILKVGRISQSSAKQRAGRA
GRTEPGTCYRLYSEDDFESMLPHQEPEIRKVHLGVAILKIMALGVKDLQEFDFVDAPSTS
SIDLAVRNLVQLGAIVLKNGAYELTTDGKHIVKLGIEPRLGKIILQSFRQQLGKEGLVLA
AVMVKSSSIFCRVGTVDAKLKSDCLKVRFCHPTGDLFTLLGVYREWESVPREKRNTWCWE
NSINAKTLRRCQDIVIELEACLKNEMNIIVPNYWYWNPQIHGEHDKILKNVILSSLPGNV
AMYSGHDQLGYEVALTRKHVQLHPACSLFNFGQRPAWVVFSEIISVSNEYLACVTACDFD
YFLTLSPSLPFDFLVMNSQQLHKRVLSGFGSVQLKRFCGKSNSNVRFLESKIRESYADER
IGVVVDVDQNEVLVFASSQDIEKVMGLVIEALEYEKKLLQNECVEEFMYGPKVLNSIALF
GAGAEIKHLELEKRCLSVDIYHSNASALDQKELLLFLESFTSGFVCSVSRLLVSGPENEE
KDKWGRVTFLTPDAAEKAAELNEIEFSGGLLKVIPSMKNHDSDLRMMSSNRIKAKISWPR
RRSKGVAFVKCNPDDVDAMVNDLSNLVIGDRFVWCRPSDKFPDSIKITGLDRDLSQEDIR
PVIRAVTSRHITDFFLLLENANDDLLPPPPACEDAILREISPFMPRRNKGVPVNVKVFPP
EAKDSLMRAQIDFDGSLHLEAARALEHIDRKVLPGCDSWQKIVCHRLFDGSVYCPPSVYH
VIGNEFHHFLRRLRHDPHYQGVEWNLEKTHNGGILVKISASATRLVFELKNSLSELVGGT
IIHHPDITPSVLQILFSRDGVLLMKSVERGAGTQIFFDKQKMTLRVYGPPEKIECAQQNF
VRGLLALHDSRQLEIRLRDGVLPPDMMKRVVQHFGPDLCGLRDKVPGVELSLNVRRHTIS
IVGNKALKQEVESIIHDLAQPNELQILENDYHNACPICLCEVEDSYMLEGCHHTACRSCL
VEQCESAIRNRDCFPLLCAKEGCKAPILIADLRFLFPERLHELFQASLGAYVAASGGALK
FCPSTDCPSVYRVADPSGSDAAFRCGVCFMETCMKCHMEYHPLLSCEKYREFKADPDSSL
KEWCMGKDNVKTCPGCGSTVEKVDGCNHVECRCGRHVCWVCLDSFDSSDDCYSHLRSAHP
NIEVDMFEFDVL
NT seq
5259 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaatccagcggctacggccgtcgtcagccgccgttcgccgctcgtccccgccac
aacccccaggagccccccttccgccgctcttcgtaccagcaacaccaatacagatcacag
tttccctccaacaactatgatcgcccccctggagacatcccagcccgccccaatttcatc
gtccagctacgccccgactctcagaaatcgaattccgtcaaacgggctgatgtcgaggcc
gtgattcggaagctgaaattccagccgcagagagcgaattttgttatgtcgaattttaac
tccgcctcactcggttacgagcagtggagcgagactctagcgacgattgttcagttgtgg
gagatgaaattgggcgataaggggtttagcttcgtgccccgccttgtttcgtacgttgag
cttccgtcggataggttggaattgaacgatcggttgaaggtgttgtttattgagaaattg
aagggattgaaggagggtgagttggtggagaagtgggtgaagaaattgggcactgtgatg
gatgaagttaaaaggatttctaggattttgagtgataaggcaagcttgcgggttttcaat
gagctgttgaagaaaaaggaggttttggtgggtgagagtacctttatctccaacaggatt
gaggaattcagaactggcattaggtctattgaagtgcatttggaggatgggaacaaggag
gaacgcgactttgaagttcttcaatttgtacgtggaaagattgaatggggaaggatttat
tgtttgatgatgagagaatgcaggaggcttgacgatggactgcctatttatgcccgtcgg
caggcgatcatgaagcagatacactgccaacaggtcacagtactggtaggtgagacaggt
tcaggaaagagcacacagttggttcagtttcttgctgattctggaatatgtggcgacggt
gccattatttgcactcagccacgaaaacttgctgcaataacattggcggagagggtcaaa
gaggaaagctttggctgctatgatgatacttcagttgtctgttacccgtcatattcatca
cttcaggagtttgagtccaacgtggtatttgcaactgatcactgcctgttgcagcactac
ataagcgacaatcaactatccatgatttcttgcgtagttgttgatgaggctcatgaaagg
agcttgaacacagatctccttctggctttgatcaagacactcctctgtcagaggccctgt
ctcaggcttattataatgtctgctactgtggatgcggaccaattttctgattactttttt
ggttgtaggaccttgcatgtgactggaagaaacttccctgttgctgttaaatatgaaccc
tgccattctgaagtgtctccagcttctaaattaatgccgtcatatgtacatgatgttcta
aatacagtactgaagatcaatagaactgagagtgaaggcaccattcttgcattcttgacg
tcgcagagtgaagtagaatgggcttgtgagaattttcaagcttcgtatgctatagcattg
cccttacatggaaaactttcatatgaagaccaacatagagtatttctagcctatccaggt
aaaagaaaagtcatatttgccaccaatgttgctgagacttcgttgacaattcctggtgtc
aagtatgtggtggaccctggaatggtaaaagagagcatgtatgaacctgctacaggcatg
aatattctcaaggttggcagaatcagtcagagctctgctaaacaacgagctggccgtgct
gggagaacagaacctgggacatgctatagactgtactcagaagatgattttgaatcaatg
ctgcctcaccaggaaccagaaattcgcaaggttcatcttggcgtagcaattttaaaaatt
atggcattgggtgtgaaggatctgcaggagtttgactttgttgatgcacctagtaccagt
tccatagatctggctgtcagaaatctcgtccagcttggagcaattgtgctaaaaaatggt
gcgtatgagttaacaactgatgggaaacacatagtcaagttgggtatcgagccccggctt
ggtaaaataattttgcaatcctttcgccagcagttgggtaaagagggtcttgttcttgct
gctgtaatggtaaaatctagtagcatattttgcagagttggtacggtggatgccaagttg
aaatctgactgcctgaaggtgaggttttgccatcccactggtgatctcttcacattactt
ggtgtttacagagagtgggaatctgtgccgcgtgaaaagagaaacacttggtgttgggaa
aatagcataaatgcaaagacgttgaggagatgccaggacattgttatagagcttgaagct
tgccttaaaaatgaaatgaatatcattgtgccgaactattggtattggaatccccaaata
catggagagcatgacaaaattttgaaaaatgtaatactctcttccttgcctggaaatgtg
gctatgtactctggccacgatcaacttggttatgaagtggcactaacaaggaaacatgtg
cagttgcatcccgcatgttctttgttcaatttcggccagaggccagcctgggtggttttc
tcggaaataatatctgtgtcgaatgagtatttagcatgtgttacagcatgtgattttgat
tatttcttgaccctttctccttctctaccatttgatttcttggtaatgaacagccaacag
ttgcataagagggttttatcagggtttggaagtgttcagttaaaaaggttttgtgggaaa
tctaatagcaatgtgcgctttcttgaatcaaaaataagagagtcctatgctgatgagagg
attggtgttgtagttgatgttgaccagaatgaggtgctcgtgtttgcttcttcacaggat
attgagaaagtgatgggtttagttatagaagcattggagtatgaaaagaagctgttgcag
aatgagtgtgttgaagaatttatgtatggccctaaggtcttgaactctattgctctcttt
ggagctggtgccgagataaaacatctggaacttgagaagagatgtctgtctgtggacata
tatcattctaatgctagcgcacttgatcagaaagagcttctactctttcttgagagtttc
acttcaggttttgtttgctctgttagcaggttgttggtctctggtccagaaaatgaagag
aaggacaagtggggaagggtaacatttttgacacctgatgctgcagagaaggctgctgag
ttaaatgagatcgaattcagtggtggcttgttaaaggtcattccttctatgaaaaatcat
gacagtgatctcagaatgatgtcttccaatcgtatcaaagccaaaatctcatggcctcgt
cggcgcagcaaaggggttgcatttgtgaaatgcaatccagatgatgttgatgcaatggtc
aatgatctctccaatctagttattggtgacaggtttgtttggtgtagaccaagtgataag
tttccagacagcattaaaattactgggcttgacagggatctgtctcaagaagatatacgt
ccggtcataagagctgtgacaagtaggcatatcacggacttctttctgctgctagagaat
gcaaatgatgatctcttaccaccaccaccggcttgtgaggatgccattttacgtgaaatt
tctcccttcatgcctagacggaataagggtgtccctgttaatgttaaggtatttccacca
gaagcaaaggatagtctaatgagagcccaaattgattttgatggaagtttacatttggag
gcagctagggccctggagcatattgaccgcaaagtactacctgggtgtgactcgtggcag
aaaattgtatgccatcgactatttgatggctctgtgtattgccctccctctgtatatcat
gttatcgggaacgagtttcatcatttcctcagaaggcttcggcatgatccgcattatcaa
ggtgtagaatggaatctggagaaaacccataatggtggcatcctagtaaagatatctgct
agcgctacgagacttgtttttgagttgaaaaattctctgtcggagctcgttggagggacg
attatacatcatccggatataaccccttctgttcttcagattcttttttcgcgtgatggg
gttctgcttatgaaatctgttgagcgaggggctggaacacagatattcttcgataagcag
aaaatgactttgagagtctatggtcctccagaaaagatcgagtgtgcacaacagaatttt
gtcagaggtctccttgccctacatgacagcaggcaactggagattcgacttcgtgatgga
gtcttacctcctgatatgatgaagagagttgttcagcatttcgggccagatctttgtgga
cttagagataaagtaccgggggtggagctgtctttaaatgtaagacgtcacactatatct
attgtaggtaacaaagcattgaagcaggaagtcgaaagcataatacatgatcttgcacag
ccaaatgagttgcaaattctggagaatgattatcataatgcttgtcccatttgcttatgt
gaagtggaggattcttacatgcttgagggctgccatcacacagcctgccggtcatgtttg
gttgagcagtgtgaatctgctatcagaaatcgtgattgtttcccgttgctatgtgctaaa
gagggttgcaaggctccaatcttgattgctgatttgaggtttttgtttcccgagcgactt
catgaacttttccaggcttccttgggtgcgtatgtggcagctagtgggggtgctttgaag
ttttgcccgtcgaccgactgcccttcagtctacagagtagcggatcccagtgggtccgat
gcagccttcagatgcggcgtgtgcttcatggagacgtgtatgaagtgccacatggaatac
catccgctcctgtcctgtgagaaatatcgcgagttcaaagctgatcccgactcatcgctc
aaggagtggtgcatggggaaagataacgtgaagacctgccctgggtgtgggtccacagtc
gagaaggtggacgggtgcaaccacgtcgagtgcaggtgcgggagacacgtgtgctgggta
tgcttggattcgtttgacagttctgacgactgctacagccatctgaggtctgcacaccca
aacattgaggtggatatgtttgagtttgatgtgttatga
DBGET
integrated database retrieval system
