Salvia splendens (scarlet sage): 121769005
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Entry
121769005 CDS
T07627
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121769005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121769005
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121769005
Spliceosome [BR:
sspl03041
]
Complex C
Other components
Step II factors
121769005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
HA2_C
DEAD
AAA_22
AAA_19
ABC_tran
AAA_16
AAA_30
nSTAND3
SLFN-g3_helicase
ATPase_2
Helicase_RecD
Flavi_DEAD
AAA_29
T2SSE
FtsK_SpoIIIE
NB-ARC
AAA_18
AAA_33
SRP54
DAP3
nSTAND1
Dynamin_N
AAA_23
Motif
Other DBs
NCBI-GeneID:
121769005
NCBI-ProteinID:
XP_042021575
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All DBs
Position
15:7736850..7742178
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AA seq
710 aa
AA seq
DB search
MSTISMAELPVLQFEDKIVETVDKNPVVVVIGETGSGKSTQLSQILHRRGYTKSGCIAVT
QPRRVAAVTVSRRVSEELNVPLGDEVGYAIRFEDRTSEKTIIKYLTDGVLLRESLSNPEL
SQYSVIILDEAHERSLNTDVLLGLMKRLIKLRASNLKVLVTSATLDGEKVSRFFSDCPIL
NVPGKLFPVEIHHSSERPKSYIDACLNKALDIHTQEPEGDVLIFMTGQDDIEKLVSRLEE
RIQRLEEGSCMDAVIYPLHGSLPPELQIRVFSPPPPNCRRFIVSTNIAETSLTVDGVVYV
IDPGFVKQRQYNPSTGMYSLDVVQISKVQANQRAGRAGRTRPGKCYRLYSSVAYKDDLLD
ATIPEIQRSSLAGSILYLKSLDLSDINILKFDFLDPPSFEALEDALKQLYLIDAIDDKGS
ITSLGRTMAELPLEPSLSRTLLEANECGCLSQSLTVAAMLSAETTLLISQSKSADKKRKH
TPSNLPDGSGLGDHIQFLQIFELWHETDYNTGWCKENNLQVRGMKFVKDVRKQLCQIIQK
IAKGPMDVKTSKRRREDQDYRSLRKALCSGYGNQLAERMLRHNGYKTLGFKSQLVQVHPS
SVLRTDEEGMFPNYVIYHELIATTRPYMRNVCAVEMPWVRPVFAKLQNLNVSKLSGGANQ
SHEEVQPENADVRKDDGGGNAAPAQPAEDRDSKILAARERYLARRGQANK
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaccatttcaatggcggaactgccggttcttcaatttgaagacaaaatcgtggaa
actgtggataagaatccggtagtagttgtaatcggtgaaactggatcagggaaaagtact
cagctctctcaaattcttcacagacgaggttacaccaaatcgggttgcatcgctgtaact
cagccgcgtcgagttgccgctgttacagtatcaaggcgtgtctcagaagaattgaatgtg
ccgctgggtgatgaggtaggttacgcgatccgctttgaagatagaacttcagagaagacg
attataaaatacctaaccgatggagttctcctgcgcgaaagtctttccaacccagagctg
agtcaatattcggtcatcatattagatgaagctcatgagaggagcttgaatacggacgtg
ttgcttggattaatgaaaaggttaataaagttgcgtgcatccaatttgaaagttttggtc
acttcagctacacttgatggtgaaaaagtatcgagattcttctcggattgcccgatcctc
aatgttccagggaagttattccctgttgagatccatcatagctctgaaagaccaaaaagc
tatattgacgcttgtttgaacaaagctcttgatatacacactcaagaacctgaaggcgac
gtcttaatatttatgacaggacaggatgacatagagaagttggtctcaagactggaagaa
agaatccaaagattggaggaagggtcttgtatggatgctgtaatttatccacttcatgga
tctctgcctcctgaattgcaaatccgtgtatttagtcctccacctcccaattgtcgtcga
ttcattgtttctaccaacatagcagagacgtctttgactgttgatggtgttgtgtatgta
attgatcctggcttcgtgaaacaacggcagtacaacccatcaactggcatgtactctctt
gatgttgtccaaatcagcaaagtgcaggctaatcagcgggcaggaagagctggaagaaca
cgtcctgggaagtgctatcgtttgtactcttctgtggcctacaaggatgacttgctggat
gctacaatcccagaaatacagagatcttcccttgcaggaagtatcctgtatttgaaatca
ttggacctatcagacatcaatattctcaaatttgacttccttgacccaccttcttttgaa
gctctggaagatgccttaaagcagttataccttattgatgccatagatgacaagggttca
atcacaagtcttggacgaactatggctgaacttccactagaaccttcactgtcgaggacc
ttgttagaggcaaacgagtgcggctgtctatctcagtctttaacagtcgctgcaatgtta
tctgcagagactacattgctcataagccaaagtaaaagtgcagataagaagcggaaacac
actccttcaaatcttccagatggttctggcttgggcgaccacatccagttcctgcaaatt
tttgagctttggcatgaaactgactataatactggctggtgcaaagagaataacttacag
gtgagggggatgaagtttgtcaaggatgtccggaaacagttatgccaaataattcagaag
attgccaaaggacccatggatgtgaaaacaagtaaaaggcgaagggaagatcaagattac
agatccttgaggaaagctttatgttcaggatatggaaatcaactagccgagcgaatgctt
cgtcataatggctataagacccttggcttcaagtcacaattagtacaggtacacccatca
tcagtgctgaggacagatgaagaaggcatgttccccaattatgtcatctatcatgaactc
attgctaccacacgaccctacatgcgaaatgtttgtgctgttgagatgccttgggtcaga
ccagtctttgctaaactccaaaatctgaatgtcagcaaactcagtggaggagccaaccag
tctcatgaagaggttcaaccagaaaacgcagacgtgcggaaggatgatggtggtggcaat
gctgctccagctcaacctgctgaggaccgcgacagtaagattcttgcagcccgtgaacgt
tatcttgctcgtagaggtcaagccaataaatag
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