Salvia splendens (scarlet sage): 121769281
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Entry
121769281 CDS
T07627
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121769281
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121769281
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121769281
mRNA degradation factors
5'-3' decay
Lsm complex
121769281
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
121769281
NCBI-ProteinID:
XP_042021963
LinkDB
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Position
15:complement(975259..978264)
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AA seq
128 aa
AA seq
DB search
MSWDGPEDVYLSTSLASYHDKKLLVLLRDGRKLLGILRSFDQFANAVLEGACERVIVGEL
YCDIPLGLYIIRGENVVLIGELELNKDELPSHMTRVSSAEIKRAQKAEREASELKGLMIK
RMDFLDMD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgggatggccctgaagatgtctatctctcgacttccctagctagctatcatgac
aagaagcttcttgtattacttcgggacggccggaagctattagggatccttcgctccttt
gaccagtttgctaatgctgtcctagagggcgcgtgtgagcgtgttattgtaggcgagctt
tattgcgatatccccctgggtttgtacataatccgtggagaaaatgtcgtcttgattggg
gagctggaattgaacaaggatgagcttccatctcacatgacccgcgtttcatcagctgag
ataaagagggcgcagaaggcagaaagggaggcttcggagctcaagggtctgatgataaag
aggatggactttcttgatatggattga
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