Salvia splendens (scarlet sage): 121769336
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Entry
121769336 CDS
T07627
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7-like
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121769336
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121769336
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
121769336
Spliceosome [BR:
sspl03041
]
Complex C
Other components
Step II factors
121769336
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
SLFN-g3_helicase
AAA_30
Flavi_DEAD
AAA_24
T2SSE
nSTAND3
Sigma54_activ_2
AAA_16
ABC_tran
SRP54
TMEM247
ATPase
ResIII
Motif
Other DBs
NCBI-GeneID:
121769336
NCBI-ProteinID:
XP_042022047
LinkDB
All DBs
Position
15:complement(7696689..7704756)
Genome browser
AA seq
1312 aa
AA seq
DB search
MEGNGKDKEYDLDKITDTLAPEDSTVGGLLVPGKDRVVFRPLKKSVLGLDMLANAKRMES
KADGSFKKPKERVASIASSLDEGEDLPASSGITDVENVTSSSLRSYSNRKYRESASNETS
NLGSVVTGEANAVEASPRHHSDRHMNVRTESVESSRSRSPSSDYTRSDRDRSKYDEHYRS
SDREARTPRDRYGSDQEGRTHRDRYGSGREGRTPRDRYGSDREGRTPSDRYGYDREGMTP
RESSRGQEKEHDGRKRGRYDRSMRTPVRSDWDDGRWEWEESPRRDGHNSSSRHYRPSPSP
MLVGASPDARLVSPWLGGRTPNSSAASPWDSYAPSPTPIRASGTSLRSASSRYGGRSNQA
YPKDGEIEPESTSEDQNHEITESMRLEMEYNSDRAWYDREEGGTVYDADSSSAFLGDDAS
FQKKEAELAKRLVRRDGTKMTLAQSKKLSQLTADNAQWEDRQLMRSGAVRGTEVQTEFDD
EEERKVILLVHDTKPPFLDGRIVFTKQAEPVMPLKDPTSDMAIISRKGSNLVREIREKQS
MNKSRQRFWELAGSNLGNILGVEKTAEQVDADTAEVGEQGEIDFKQDAKFAQHLKKGEGV
SDFAKSKTLAQQRQYLPIFSIREELLQVIRENQVIVVVGETGSGKTTQLTQYLHEDGYTN
NGIVGCTQPRRVAAMSVAKRVSEEMETELGDKVGYAIRFEDVTGPNTVIKYMTDGVLLRE
TLKDSDLEKYRVIVMDEAHERSLSTDVLFGILKKVVARRRDFKLIVTSATLNAQKFSDFF
GSVPIFHIPGRTFPVQTLYSKSPCEDYVEGAVKQAMTIHITSAPGDILIFMTGQDEIEAT
CYALQERMEQLASKKEAPKLLILPIYSQLPADLQAKIFENAEDGARKCIVATNIAETSLT
VDGIFYVIDSGYGKIKVYNPRMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESA
YLNEMLPSPVPEIQRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQENILNSMYQLWVLGAL
NNVGDLTDIGWKMVEFPLDPPLAKMLLMGEQLQCIDEVLTIVSMLSVPSVFFRPKDRVEE
SDAAREKFFVPESDHLTLLNVYKQWKSNNYRGDWCNDHFLHVKGLRKAREVRSQLLDILK
TLKIPLTSCGLDWDVVRMAICSAYFHNSARLKGVGEYVNCRNGMPCHLHPSSALYGLGYT
PDYVVYHELVLTAKEYMQCATAVEPQWLAELGPMFFSVKDSDTSMIEHKKKQKQEKSAME
EEMESLRKVQEDKERERKEEEKKKRQKEQQQVSLPGLKRGASTYLRPKRLGL
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atggagggaaacggaaaagacaaggaatatgatttggataagatcaccgatactctagct
ccagaagactctactgttggtggcctgcttgttccagggaaggatagagtggtttttaga
ccacttaaaaaatcagttttaggactagacatgcttgccaatgcaaagcgaatggagtca
aaggctgatggttcatttaaaaaaccaaaagaaagagttgcttcgattgcttcatcacta
gatgaaggtgaggatttgcctgcttcttcaggaataactgatgtggagaatgtcacgtct
agtagtctacggagttacagcaataggaaataccgtgaatcagcttcaaacgagacttct
aatttaggaagtgttgttactggagaagcaaacgcagttgaagcatccccccggcatcat
tcagatagacatatgaatgtgcggactgaatctgttgaaagttcaaggagtaggagtcct
agttctgattataccagaagtgatagagatcgaagtaaatatgatgagcactacagaagc
tctgacagggaagcgaggacccctagagatagatatggctctgaccaggaagggaggacc
catagagatagatatggctctggccgggaagggaggactcctagagatagatatggctct
gaccgggaagggaggacccctagcgatagatatggctatgacagggaagggatgacccca
agagagtcctctcgtggtcaagaaaaagaacatgatgggagaaaaagaggtagatacgac
aggtccatgagaacacctgtcaggtctgactgggatgatggaagatgggagtgggaagaa
tccccgcgtcgtgatggtcacaattctagcagcagacattatcggccttctccatccccc
atgcttgttggggcctcacctgatgctcggcttgtttctccatggttgggagggcgtact
cctaattcttcagctgcatctccttgggatagctatgctccttcccctactccaattcgg
gcatctgggacatctcttaggtctgcaagctcccgatatggtgggagatccaatcaggct
taccctaaggatggcgaaattgaaccagaaagtacatctgaagaccagaatcatgagata
acagaaagtatgcgtttagagatggaatacaactctgatcgtgcatggtatgatcgagaa
gaaggcggcactgtttatgacgctgatagctcctctgcttttctcggcgacgatgcgtct
tttcagaaaaaagaagcagagttggctaagagattggtgagaagagatgggactaagatg
actcttgcacagagcaaaaaactttcgcagctaactgctgataatgctcagtgggaggat
agacaacttatgagatcaggtgctgtcagaggaactgaggtgcagacagagtttgatgat
gaggaagaacgaaaggttattcttcttgtgcatgatacaaaacccccttttctcgatggg
agaattgttttcacaaagcaagctgagcctgttatgccattgaaagaccctacgtccgat
atggctataatatcacggaagggctccaatctggtcagggaaattcgtgaaaaacaaagc
atgaataagtccagacaacggttttgggagcttgctggttctaatcttggcaatattctt
ggtgttgagaaaactgccgaacaggttgacgcagatactgctgaagttggcgaacaaggt
gaaattgatttcaaacaggatgcaaaatttgcacaacatttaaaaaaaggagagggagtc
agtgatttcgctaagtcaaaaacgttggcgcaacagcgacaatatttgcccatcttttct
atccgagaagagttactgcaggtaatccgcgaaaaccaagtgatcgtagtggttggtgaa
actggttcaggaaagacaacacaactaacacagtatcttcacgaagatggatacacaaac
aatggcattgttggttgcacacaaccaaggcgtgtggccgccatgagtgttgcaaaaaga
gtcagtgaagagatggaaactgaacttggtgataaagttggatatgccatacgttttgag
gatgtcaccgggcctaacactgttattaagtacatgactgacggtgtgttgctgagggag
acactaaaagattcagacctggaaaaataccgcgtcattgtgatggatgaagcgcacgag
cggtctctaagcactgatgtacttttcggtatcctcaagaaagtcgtggccaggcgtcgt
gatttcaagcttattgtgacttctgctactctaaatgctcaaaagttttcggattttttt
gggagcgtacctatatttcacattcctgggaggacatttccggttcagacattgtacagt
aagtcaccttgtgaagattacgttgaaggtgcagtaaaacaggcgatgacgattcacatc
acgagtgctcctggcgacatcctaatcttcatgaccgggcaagatgagattgaggcgaca
tgttatgctcttcaagaacgtatggaacaactcgcttccaaaaaggaagctccaaagctg
ctaatccttcccatatactcccagcttcctgctgacttgcaagcaaagatttttgagaat
gctgaagatggagctcgcaagtgtattgttgctacaaatattgctgagacgtcgttgact
gtcgatgggatcttctatgtcattgactcgggttatggtaagataaaagtctataacccc
cgtatgggtatggatgctctccaagtctttcctgttagtcgcgctgctgctgatcagcgt
gctggacgggctggaagaactgggccggggacttgctaccgtctttatacagagagcgct
tatctgaacgaaatgctaccaagtccagtcccagaaatccagagaaccaacttgggaaat
gtggttttgctgctcaagagtttgaaaatcgacaaccttttagatttcgacttcatggat
cctcctccacaagaaaacatcctcaactccatgtaccagctgtgggtgttgggtgctctc
aacaacgtcggagatctgacagatataggttggaagatggtggagtttccgttggatccc
cccttggccaagatgcttctaatgggagagcagctccagtgcatcgacgaggttctaaca
atcgtgtcaatgctttcagtgccctctgttttcttccgacccaaggaccgcgtggaagag
agcgacgccgcaagggaaaaattctttgtcccggaatctgaccacctcacgctcctaaat
gtgtacaagcaatggaagtcgaacaactaccggggggactggtgcaacgaccatttcctg
cacgtgaaaggcttgcgcaaggctagagaggtaagatcccagctcctcgacattctcaag
acactcaagatcccactcacgtcgtgtgggctcgactgggatgtagtgagaatggccata
tgctcggcgtacttccacaactcggctcgcctcaagggtgtcggggagtatgtcaactgc
agaaacgggatgccctgtcacctccatccgagcagcgccttgtacggcttggggtacact
ccggactatgtcgtctaccatgagctggtcctcacggctaaagaatacatgcagtgtgcc
acagctgttgagccgcagtggctggctgagctcggacccatgtttttctcggtgaaggac
tcggatacgtcgatgatcgagcacaagaagaagcagaagcaggagaagagtgcgatggag
gaggagatggagagtttgaggaaggtacaagaggataaggagagagagaggaaagaggaa
gagaagaagaagaggcagaaggagcaacagcaagtttccttgcctgggttgaagagaggg
gcttcaacatatctcaggcccaaaaggcttgggctgtaa
DBGET
integrated database retrieval system
