KEGG   Salvia splendens (scarlet sage): 121769388
Entry
121769388         CDS       T07627                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1-like
  KO
K14962  COMPASS component SWD2
Organism
sspl  Salvia splendens (scarlet sage)
Pathway
sspl03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:sspl00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    121769388
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sspl03019]
    121769388
   03036 Chromosome and associated proteins [BR:sspl03036]
    121769388
Messenger RNA biogenesis [BR:sspl03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     121769388
Chromosome and associated proteins [BR:sspl03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     121769388
    COMPASS/SET1 complex (yeast)
     121769388
SSDB
Motif
Pfam: WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40 WD40_CDC20-Fz EIF3I WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_TEP1_2nd NBCH_WD40 Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_SPT8 Beta-prop_Vps41 Beta-prop_SCAP Beta-prop_NUP159_NUP214 Beta-prop_IFT122_1st KNTC1_N Beta-prop_VPS8 Beta-prop_Nup120_160 WDR90_beta-prop_4th Beta-prop_WDR75_1st B-prop_COPA_B_2nd VPS11_N DUF2415
Other DBs
NCBI-GeneID: 121769388
NCBI-ProteinID: XP_042022120
LinkDB
Position
15:complement(21811964..21816323)
AA seq 332 aa
MAGGQSEREDKVSLELTEEILQSMEVGMAFRDYNGRISSMDFHKTSGYLVTASDDESIRL
YDVASATCLKTINSKKYGVDLVSFTSHPTTVIYSSKNGWDESLRLLSLHDNKYLRYFKGH
HGRVVSLSLCSRNDCFVSGSLDRTVLLWDQRAEKCQGLLRVQGRPAAAYDDQGLVFSVAF
GGYIRMFDTRKYEKGPFDIFSLGGDVSEANVVKFSNDGGLMLLTTSNGHIHVLDSFRGTL
LATHNVKPVSSNSTLEASFSPEGTFVISGSGDGSVYVWSVRSGKEVASWMSTEAEPPVIK
WAPGNLMFVTGSSELSFWIPDLSKLAAYVGRK
NT seq 999 nt   +upstreamnt  +downstreamnt
atggcgggaggtcagtcggagagagaagacaaagtttcattagaactgacggaggaaatc
cttcagagtatggaagttggaatggcgttccgcgactataatggaagaatcagttcgatg
gatttccataagacatcaggttatttggtaactgctagcgatgatgaatccattcgtctc
tatgatgttgctagtgcaacatgtttgaagacaataaacagtaaaaaatatggagttgat
ctggttagctttacctctcatcctacaactgttatttactcgtcaaagaatggctgggat
gaatcactacgacttctttcgttgcatgataacaagtacttgaggtacttcaagggtcat
catggcagggttgtttcgctgagtctctgctccagaaatgattgttttgtttctggatca
ctggatagaactgtattgctttgggaccaaagggctgagaaatgtcagggtcttctacgt
gttcaagggagaccagccgcagcttatgacgatcaaggacttgttttttctgttgccttt
ggaggatacataagaatgtttgatactaggaaatatgaaaagggcccttttgacatattt
tctcttgggggagatgtttcagaagccaatgttgtgaagttcagtaatgacggaggactt
atgcttctgacaacgtcaaatggacatattcatgtccttgattccttccgtggaaccctt
ttggcgacacacaacgtcaagccagtttcaagcaattctactttggaggcttctttcagt
cctgagggaacgtttgtcatatcaggttctggagatggtagtgtttacgtttggagtgtt
cgaagtggaaaagaggttgctagttggatgagtactgaagcagaaccacctgtaatcaaa
tgggctccaggaaacttaatgtttgtaactggctcttctgaattatccttttggataccc
gacttatctaaactcgcagcttacgttggaaggaagtag

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