Salvia splendens (scarlet sage): 121770009
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Entry
121770009 CDS
T07627
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121770009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121770009
Spliceosome [BR:
sspl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
121770009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_Gbeta
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_Aladin
Beta-prop_TEP1_C
NBCH_WD40
PRP4
ANAPC4_WD40
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_WDR19_1st
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_WDR41
Beta-prop_SCAP
Beta-prop_Nup120_160
Nbas_N
WD40_like
Tricorn_2nd
Motif
Other DBs
NCBI-GeneID:
121770009
NCBI-ProteinID:
XP_042022735
LinkDB
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Position
16:complement(13825588..13829648)
Genome browser
AA seq
573 aa
AA seq
DB search
MDIDEENTVTTSAADSVSPAGDEPMDSGIDAMSLQAVQPVIAPTAPTTVIPPIAPLPTVP
HSVPRPLAPIPIRPPVHRPPVPKGDSRTSDSDSDEEGSGMNQTAAGQEYEISEESKLARE
RQEKAVQELLMKRRTAALAVPTNDNAVRARLRRLGEPITLFGEREMERRDRLRALMAKLD
SEGQLEKLMKAHEDEEAGSTAAPSGPEEDIHYPFFTEGTQSLLEARREIAKYSIVKSALR
LHRARRKRDDPDEDLDAEVDWSLKQAANLELKSSEMGDVRPLSGCSISHDGQMLATCSLS
GVAKVWSMPEVKKVSALKGHTERATDVAFSPINYQLATASADRTARLWNLDGTALRTFEG
HLDRLARIAFHPSGKYLGTASFDKTWRLWDVESGEELLLQEGHSRSVYGLSFHHDGSLVA
SCGLDSLARVWDLRSGRSILALEGHVKPVLGASFSPNGYHLATGGEDNTCRIWDLRKRKS
LYIIPAHSNLLSQVKFEPQEGYFLVTASYDTTAKVWSSRDFRPVRTLSGHESKITSLDVV
ADGQYITTVSHDRTIKLWSTQDTERERKEMEVN
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atggacatagatgaggagaatactgtcactacctcagctgcagattctgtttcccctgct
ggggatgaacccatggattctggtattgatgcaatgtcacttcaagcggttcagcctgta
attgcacccactgctccaaccactgttatacctcctattgccccactacctactgtacct
cactcggttccaagaccattggctccgatacctatccgccctcctgttcataggcctcct
gtaccaaagggagactcaagaactagtgattcggattctgatgaggaagggtcaggtatg
aatcaaactgctgctggtcaggaatacgagatctcagaagaaagcaaactggccagggag
agacaggagaaagcagtacaggaacttctgatgaagcgtcgcactgctgccctggcagtg
cccactaatgacaatgctgtccgagctcggcttcgtcgacttggtgaacctataactctc
tttggagagagggagatggagaggcgtgatcgtctacgggcgcttatggcaaaacttgat
tctgaaggccagttggaaaagctgatgaaagctcatgaggatgaagaagctggaagcacg
gcagcaccttctggacctgaagaagatattcattatccctttttcactgaaggtactcaa
tcactattagaagctcggcgagagattgcaaagtattctattgtgaagtcagcactgcgc
ctccatcgtgcaaggagaaaaagagatgaccctgacgaagatttggatgctgaggtagat
tggtctttgaagcaggcggcaaatctagaactaaaaagcagtgagatgggtgatgttcgg
cctctttcaggatgctcaatttcacatgacgggcagatgcttgccacctgttctctaagt
ggagttgcaaaggtctggagcatgccagaagtaaagaaggtttcagctctaaaagggcat
accgaacgagctactgatgttgcattctctccaatcaactaccaattggctactgcctca
gctgacaggactgcaagactatggaacctggacgggactgccctgagaacatttgagggc
catttagaccgccttgctaggatagccttccatccgtctggaaagtatttgggtacggct
agctttgacaagacttggagattatgggatgtcgagtccggtgaagagttgcttctccaa
gaaggtcatagtaggagtgtatacggattgtctttccatcatgatggctccttagtagct
tcttgtggactggattctcttgctcgtgtgtgggacctgagatctggacgtagtattctt
gctctggaaggccatgtcaaacctgttcttggtgccagtttttctcccaatgggtatcat
ctggctactggcggtgaagacaacacttgcaggatttgggatttgaggaagagaaaatct
ttgtatataatacctgctcactccaacctgctttctcaagtcaaatttgagcctcaggag
ggatactttttagttacagcttcatatgatacgactgctaaggtttggtcgtcgagagat
ttccggcctgtaaggacattatctggccatgaatcaaagattacgtcgctggatgttgtt
gcagatggacaatacattacaaccgtctcacacgatcgaacaattaagctatggtcgact
caagacactgagagagagaggaaggaaatggaagttaactga
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