Salvia splendens (scarlet sage): 121770568
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Entry
121770568 CDS
T07627
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl04120
Ubiquitin mediated proteolysis
sspl04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121770568
04120 Ubiquitin mediated proteolysis
121770568
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sspl04121
]
121770568
Enzymes [BR:
sspl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121770568
Ubiquitin system [BR:
sspl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121770568
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-rbx1
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-ANAPC11
FlxA
zf-RING_Vps41
zf-RING_16
zf-RING_11
zf-RING_5
zf-HC5HC2H
zf_RING_Vps8
Integrase_2
Prok-RING_4
zf-RING-like
Motif
Other DBs
NCBI-GeneID:
121770568
NCBI-ProteinID:
XP_042023235
LinkDB
All DBs
Position
16:9349267..9353279
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AA seq
500 aa
AA seq
DB search
MIGREQSEMMRLQTYGGISLIATLAVIYHAFSSRGQFYPAMVYLSTSKISLVLLLNMGLV
VMCILWQLTKKIFLGKLREAEVERLNEQSWREVMEILFAITIFRQDFSVSFIVMVTALLL
IKALHWLAQKRVEYIETTPSVPKLAHIRIVSFMGFLLLLDCSFLYNSIKYLLETKQASVS
LFFAFEYMILATTTVSTFLKYIFYVSDMLMDGQWEKKAVYTFYLELARDLLHLTMYMCFF
LVIFVNYGVPLHLIRELYETFRNFKIRISDYLRYQKITSNMNDRFPDATSEEINSSDATC
IICREEMTTAKKLLCGHLFHVHCLRSWLERQNTCPTCRAPVVPPEHGMSTTGTRSGGQQQ
GTSATGTSSQGSVSAGEANGNISQHQARLQAAASAASMYQKSFVYPSPSTLAWSSGHTLP
TQPFGPSGPNMTANDSASASQQDMQVKLIERQIEYLQWQLQHLQASGSEKKMGSGASDIK
GKAVSSPSSSIVDSSETGNP
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgatcggcagggaacagagcgaaatgatgaggctgcaaacgtatggagggattagttta
atagctacactggctgttatctatcatgcatttagtagcagaggccagttttatccggca
atggtttacctgtctacttcaaagatcagtttggtgctgcttttaaatatgggcctggta
gttatgtgcattttgtggcaattaacaaaaaagatcttccttggcaagttacgagaagca
gaagtggaaaggctgaatgagcagtcatggcgggaagtcatggaaatactgtttgccata
actatttttagacaagatttttcggtttcatttatagtgatggttactgctttacttttg
atcaaagctttgcattggttggcccagaagagagttgaatacattgaaacgactccgtct
gttcctaagctagctcatatccgaattgtatctttcatgggattccttctccttcttgat
tgtagctttctctacaactcaatcaagtatctcttggaaaccaaacaggcttcagtttca
ctcttctttgcattcgagtacatgatactggccacaacaactgtatcgacatttttgaaa
tatatattctatgtcagtgacatgcttatggacggacaatgggagaagaaggctgtttac
accttttacttggagcttgctcgagacttgcttcacttgactatgtacatgtgtttcttc
ctcgtcatttttgtgaactatggtgtgcctcttcacttgatacgggaactgtatgagact
ttccgtaacttcaaaatccgtatttctgactatctgcgctatcagaagattacctcaaat
atgaatgatcgtttccctgatgcaacatctgaagagatcaactcgagtgatgcaacctgc
attatttgccgagaggagatgactactgcaaagaaacttctatgtgggcatctctttcat
gtccactgcctcaggtcatggttagaaagacaaaatacatgccctacatgcagagcacct
gttgtaccacctgaacatgggatgagtactactggaacgcggtctggtggtcaacaacaa
ggaactagcgctactggtacatcatctcaaggctctgtcagtgctggtgaagcaaatggt
aatatcagtcagcatcaggctagactccaagctgctgcttctgctgcatctatgtatcaa
aagtcttttgtgtatccttctccaagtactctagcatggtcgtctggacataccttacct
actcaaccatttggaccttccggccccaatatgacagcaaatgatagtgcatcagcctct
caacaggatatgcaagtaaaattaattgagcgccagattgagtatctacaatggcagctc
cagcatctacaagcatcaggcagtgagaagaaaatgggttcaggagcatcagatattaaa
gggaaggcagtatcatcaccatcttcgtctattgtagactctagtgagacgggcaaccca
tag
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