Salvia splendens (scarlet sage): 121771748
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Entry
121771748 CDS
T07627
Name
(RefSeq) ATP-dependent RNA helicase-like protein DB10
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121771748
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121771748
03009 Ribosome biogenesis [BR:
sspl03009
]
121771748
Enzymes [BR:
sspl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121771748
Spliceosome [BR:
sspl03041
]
Complex A
U1 snRNP components
U1 related factors
121771748
Complex B
121771748
Ribosome biogenesis [BR:
sspl03009
]
Eukaryotic type
Pre-60S particles
Helicases
121771748
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
WW
ResIII
ERCC3_RAD25_C
DUF6140
CvfB_2nd
Motif
Other DBs
NCBI-GeneID:
121771748
NCBI-ProteinID:
XP_042024544
LinkDB
All DBs
Position
16:complement(3427007..3432003)
Genome browser
AA seq
668 aa
AA seq
DB search
MAAAAAGISYAPEDPALPKPWKGLVDDKTGYVYYWNPETNITQYEKPVVPGHTSYTPAHK
SLSSSVQKSPQGRYNANDNDDRYPRASNGSTKASVPVAYQDVTNRSDYSQIDVEVKASVG
YGPLTSNGAEGMVSAEAYRRRHEISVTGDNVPPPFTSFEATGFASEILREVQHAGFSSPT
PIQAQSWPIAIKGRDIVAIAKTGSGKTLGYLIPGFIHLKQRRNNPRLGPTVLVLSPTREL
ATQIQDEAVKFGRSSNISCTCLYGGAPKGPQLRDIDRGVDVVVATPGRLNDILEMRRISL
QQVSYLVLDEADRMLDMGFEPQIRKIVAEVPVRRQTLMYTATWPKEVRRIASDLLVSPVQ
VNIGNVDELVANKAITQHVEVLSPMDKRRRLEQILRSQEPGSKIIIFCSTKKMCDQLAGN
LTRQFGAAAIHGDKSQGERDYVLNQFRTGRSPVLVATDVAARGLDIKDIRVVLNYDFPTG
VEDYVHRIGRTGRAGATGVAYTFFCEQDAKHASELIKLLEGASQRVPSELRDMASRGGGM
GRTRRQWGSGPGGRDGGRGGGRFGSTQSGRDGGRGGWGMPSSQDRAGGRDRHVNGFSNGY
DTNGTGSFHQRSFHENTITAPKSRGRSRSRSPRKISGWGEKPRSRSRSMERFPSKSTRPS
SYGNKDYK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagctgcagctggtataagctatgcacctgaggaccctgcgctcccaaaacca
tggaagggtttggttgatgataagactggatatgtttactattggaatccagagaccaat
ataacccaatacgagaaacctgttgtccccggtcacacaagctataccccagctcataaa
tctttgagctcatcggttcaaaagtcgccccagggacgatataatgcaaatgataatgat
gacagataccccagagctagcaatggatcaacaaaggcttctgtaccagtagcttaccag
gacgtcacaaacagatcagattattcacagattgatgtagaggtaaaagcctctgttgga
tatggtcctcttacttccaatggtgcagaaggtatggtgtccgctgaagcctaccgccgt
cgtcatgaaatttctgtgactggtgacaatgtacctccaccattcacctcatttgaagcc
actggatttgcttcagagattcttagggaggtgcaacatgctggtttttcttctcctact
ccaattcaggcacagtcatggcccattgctataaaaggtcgtgatatagtagcgattgcc
aagacaggctccgggaaaaccttgggctacctgattcctggatttattcatctgaaacaa
aggcgtaataacccaagattaggtccaacagttttggtgttgtcgccaacaagagagttg
gctactcagatacaagatgaagctgtcaagtttggaaggtcatccaatatatcgtgcacg
tgtttatatggaggtgcacctaagggtccgcaattgagagacatagacagaggtgttgat
gtggtcgtggcaactcctggtcgattgaatgacattctggagatgagaaggataagcctc
cagcaggtctcatatttggtattggatgaagcagacaggatgctggacatgggttttgaa
cctcagataagaaagattgtggcggaggtccctgttcgtagacaaactctgatgtacacg
gcaacctggcccaaggaggtgcgcagaattgcttctgatttgctagttagtcctgtacag
gttaacattggaaatgttgatgagctcgttgctaacaaagcaattactcagcatgttgaa
gttctgtcgccaatggacaaacgcaggcgcctagaacagatattgagatctcaagaacct
gggtcaaagataataattttctgctctacaaagaaaatgtgtgatcagctagcaggtaat
ctgacccggcaattcggagcagctgctattcatggagataaatctcagggcgagagggat
tatgtgctgaatcagtttcgcactggaagatccccagtgcttgtggccactgacgttgct
gcccgtgggctggacattaaggatataagggtggttttgaactatgacttccctacagga
gttgaggactatgttcacagaatcggaagaactggccgggctggtgccactggtgtggca
tacactttcttttgtgagcaggatgcaaaacatgcttcagagcttatcaaactcctggaa
ggtgctagtcagcgtgtgcccagcgaactccgtgacatggcctcacgtggtggtggaatg
gggagaacaaggcgtcagtggggctcaggccctggcggccgtgatggaggtcgcggtggc
gggcgtttcggttctactcaaagtggacgggatgggggaagaggtggttggggaatgcca
tcatcccaagatagggctggtggccgtgatagacatgtcaatggattctctaacggatac
gatacaaatggcactggaagcttccatcagaggagcttccatgagaacacaatcactgct
ccaaagagtagaggcagaagtcgtagcagaagccccagaaagatttcaggatggggggaa
aagcctcgaagccgtagtcgtagcatggagagatttccatccaagagcactcggccctct
tcttatggtaacaaggattacaagtaa
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