Salvia splendens (scarlet sage): 121771835
Help
Entry
121771835 CDS
T07627
Name
(RefSeq) THO complex subunit 2-like
KO
K12879
THO complex subunit 2
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03013
Nucleocytoplasmic transport
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121771835
09122 Translation
03013 Nucleocytoplasmic transport
121771835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121771835
03041 Spliceosome [BR:
sspl03041
]
121771835
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
121771835
Spliceosome [BR:
sspl03041
]
Complex C
Other components
EJC/TREX
121771835
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121771835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
FapA
Motif
Other DBs
NCBI-GeneID:
121771835
NCBI-ProteinID:
XP_042024659
LinkDB
All DBs
Position
16:complement(11587178..11604966)
Genome browser
AA seq
1800 aa
AA seq
DB search
MSLPPLECVHVTEDAVRELKNPNSDFKFDSPALILRFLYELCYTMVRGDLPYQKCKVALE
AVEFSDSDLEGDVGSYFADIVSQMAQDLTMPGEYRSRLIKLAKWLVDSALVPLRFFQERC
DEDFLWECEMIKIKAADLKSKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCQVPEVS
TENQSAATVGIIKSLIGHFDLDPNRVFDIVLECFELQLDNSVFLDLIPIFPKSHASQILG
FKFQYFQRNEVNTPVPTGLYQLTALMVKKEFIDVDSIYPHLLPKDEDAFEQYTAFSAKRL
DEANKIGKINLAATGKDLMDDEKQGDVTVDLFTALDLETMAVGERSPDLANNQPLGLLMG
FLAVDDWFHAHQLLERLSLLNPMEYVQISRGLFRLIEKTILRAYKLVCQTQLSTAGTSSA
SSADSNLGSSNRSFINLPKELFEMLASAGPYLYRDALLLQKITRVLRGYYMCALDLVNDG
DGAFGSHSVTERIQNPRLHLKDARLKIDEALGMCLLPSLQLIPANPAVGQEIWELLSLLP
YEVRYRLYGEWEKDDERFPMILAARQTARLDTRRILKRLAKENLKQLGRMVAKLAHANPM
TVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLAQGGREKLKDDGLNLSD
WLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKRGNGIELVLLQELIQQMANVQYTENMT
EDQLDAMAGSDTLRYQATSFGMTRNNKALMKSTNRLRDSLFAKEEPKLAIPLLLLIAQHR
SVVVIKADVPYIKMVCEQFDRSHGTLLQYVEFLCSAVTPTSSYALLIPTLDELVHQYHLD
PEVAFLIYRPVMRLFKCQNSSSSFWPLVSKETEDSASTDKESEGSDLFSTLALDLGSARK
PISWLNLLDTVKTMLPPNAWNSLSPDLYATFWGLTLYDLHVPKSRYESEIAKLHGSLKAL
EELSDNSSSAIAKRKKDKERIQESLDRLTTELQKHEEHVESVRHRLAHEKDTWLSSCPDT
LKINMEFLQRCIFPRCTFSMPDAVYCANFVNTLHSLGTPFFNTVNHIDVLICKTLQPMIC
CCTEYEVGRLGRFLFETLKTAYHWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQFIK
VHWKWSQRITKLLIQCLESTEYMEIRNALIMLTKISSVFPVTRKTGINLEKRVAKIKSDE
REDLKVLATGVGAALAARKPSWVTDEEFGMGYLDIKAAPAPASRSLSSNANTLQNGAVSQ
ADQMGGRTVSAVNLLSDSGNHGRDSRRTDVDNLKQVDESANRQSEENSKAKEPETRPVVK
RSSTAGSLAKPAKTDPAKEDDKPIKNIGRASGNASTTASAKVTNSSTRSSDFHSETKVEV
TNSKSSDSKIHGGKDDGMEYSDVKQSSSRSTHSPRHENLIATSKSTEKSQKRTSPAEDLD
RLNKRRKSDVDSRETDSGEVRLSERERSNDLRATDKIHMAASEKSGSDEQVSSRVTDRAV
DKSKEKSSERYDRDHRERVERPDKSRGDDFLSEKLRDRSLERHGRERSVERVQERGADRN
FDRLAKDDRNKDDRGKVRYNDASVEKSHGDEKFHGQNLPPPPPLPPHVIPQSVSASSRRD
DDTDRRFGNARHTQKLSPRHDEREKRRSEENASVLQDDTKRRRDDEFRDRKRDERDAASI
KMDEREREKSNANKEEVDLNATKRRKLKREHMTSEPGEYLPSAPSPAPVPVSLPQTHDVR
DRVDRKGAIVQRPSYVEEPGLRVHSKEAANKTRRDADPMYDREWEDDKRQRAEPKRRHRK
NT seq
5403 nt
NT seq
+upstream
nt +downstream
nt
atgtctctgccgccgctggagtgtgtacatgtgacggaggacgccgttagagaattgaag
aatccgaattcagatttcaaatttgattctccagctcttattctccgatttctctacgaa
ctatgctacaccatggtccgaggggacctaccgtatcagaaatgtaaagtggcgttggag
gcagtggaattttcagatagtgatctggaaggggatgtgggatcatattttgctgatatt
gtttcccagatggctcaagatctcaccatgcctggcgaatatcgctcccgtcttatcaaa
ctggcaaaatggctggtggactctgcgctggttccattgagatttttccaggagcgttgt
gatgaagactttttgtgggagtgtgaaatgattaaaataaaggctgcagatttgaagtcg
aaggaggtccgcgtcaacacgcgacttctttatcaacaaactaaatttaacttgcttcgt
gaagaaagtgaaggctacgccaaactggtcaccctcctctgtcaagttcctgaagtatcg
actgaaaatcaatcagctgcaacagttggcataattaagtctttaatcggccactttgat
ctggaccctaaccgcgtttttgatattgtgttggaatgttttgagcttcagcttgataac
agtgttttcttggacctgattccgatatttcccaagtcccatgcttcacaaattcttgga
ttcaagttccagtattttcagcgcaatgaagtcaacactcctgtaccaactgggctttat
cagctaacagctttgatggtgaagaaagagttcattgatgttgatagcatatatccacat
ttacttccaaaagatgaagatgcatttgagcagtatactgccttttcagctaagaggctt
gatgaggccaataaaattgggaaaattaatctagctgccaccggaaaggatctcatggat
gacgagaaacaaggagatgtaactgtagatctttttactgctcttgatttggaaacaatg
gctgttggtgaaagatcaccagatcttgctaataatcaacctctaggcttactgatgggc
ttccttgctgtggacgactggtttcatgctcatcaactgttggagcgcctttccctcctc
aatcccatggagtatgtacaaattagccgtggattatttagactcattgaaaaaacaata
ttacgagcttacaaactagtatgtcaaacacaactttcaaccgctggtacttcttctgct
tctagtgctgattcgaatctcggaagttcaaatagatcattcatcaatttgccaaaagaa
ctatttgaaatgcttgcttctgctggaccctatctctaccgtgatgctttgttactgcag
aagataaccagagtgctcagaggttattacatgtgtgcactggatcttgttaatgatggt
gatggggcatttggttctcattctgttaccgagagaattcaaaatcctcgccttcacctg
aaggatgcaagattgaaaatcgatgaagcacttggaatgtgcctgcttccttctctgcag
ttgatacctgcaaatcctgcagttggtcaggagatatgggaacttttaagtctccttcct
tacgaggtgcgctatcgtttatatggcgaatgggaaaaggatgatgaacgatttcccatg
attttggcagccaggcaaactgcaaggttggatactcgaagaattttaaaacgccttgcc
aaggaaaatcttaagcagcttggaagaatggttgctaaattggctcatgccaatccaatg
acagttcttcgaacaattgttcatcagatagaggcttacagggatatgatcactccagtt
gtcgatgcattcaagtacttgactcagctcgagtatgatatattggagtatgttgtgatt
gaacgcttggctcaaggtggacgtgaaaagctaaaagatgatggcctcaatttgtcggat
tggctccaatcgctagcgtcattttggggtcacttgtgtaaaaagtatccgtcgatggag
ctcaggggccttttccaatatcttgtcaatcagttgaaaagaggcaatgggattgagctt
gtcctactgcaggaactaatccaacagatggctaatgtccaatacacagaaaacatgaca
gaggatcaattagatgcgatggctggaagtgacacactccgttatcaggcaacatcattt
ggcatgacaaggaataacaaggcgctaatgaagtccacaaacagactcagagattcttta
ttcgcaaaggaagaacctaaattggccattccccttttgctgctgatagctcagcatcgt
tctgtggttgttattaaagcagatgtgccttatataaaaatggtctgtgaacagtttgat
agatcccatgggacacttctgcagtatgtggaatttctgtgtagtgcggtgactcctacg
tcaagttatgctttactaattcccactcttgatgaacttgtgcatcaatatcatcttgat
cccgaggtcgcctttttgatttatcggccagtgatgagactcttcaagtgtcagaatagt
tccagttccttctggcctttagtgagtaaggaaacagaggactctgcgagtactgacaag
gagtctgaaggttcagatttattttctacgttggctctggatcttggatctgctcgcaaa
cctatctcatggctcaatcttcttgacactgtaaagacaatgctgcctccaaatgcatgg
aatagcttgtctcccgatttgtatgctactttctggggtcttacattgtatgatctccac
gtaccgaaaagtcgttatgaatctgaaattgcaaagctgcatggatctcttaaagctctt
gaagaactttctgataattctagttctgcaattgctaagaggaaaaaagataaggaaaga
attcaagagtctcttgatcgattaactacagaacttcagaagcatgaagaacatgtcgag
tctgtacgacatcgacttgctcatgaaaaggatacatggctgagttcatgcccagatacc
ttaaaaatcaacatggaatttctgcagcgttgtatatttcctcgctgcacgttcagtatg
ccagatgctgtatactgcgccaattttgttaatacacttcattccttaggaaccccgttc
ttcaacactgtaaatcacatcgatgttttgatatgcaaaacattacaaccgatgatatgc
tgctgtactgagtatgaagtgggtcgacttgggaggttcttatttgagacactgaaaact
gcttatcattggaagagtgatgaatcaatatatgagagggagtgtggaaatatgccagga
tttgctgtctattatagatatccgaacagccagcgtgtcacctatggtcaatttatcaag
gtacattggaaatggagccaacggatcactaagctactcattcagtgcttggaatcaact
gagtatatggaaatacggaatgccctcattatgctaactaaaatatcaagtgtttttcct
gttactcgtaagactggcatcaatcttgaaaagcgggtggccaaaataaaaagtgatgaa
agagaggatcttaaagttttagcaacaggtgttggtgcagcattggctgctagaaagcct
tcatgggttacagatgaggaatttggcatgggttatctagatataaaggctgctccagcc
cctgcttccaggtcattgtcatctaatgctaacaccctgcaaaatggggctgtttcacag
gccgatcaaatggggggcagaactgtttctgcggtaaacttgctttcggattctgggaat
cacggcagagattctagaagaacagatgttgacaatctaaaacaggtagatgaatcagca
aacagacaatcggaagagaactcaaaagctaaagagcctgagacaaggcctgtggtgaaa
aggtcttcaacagctggatcccttgctaagccggcgaagacagatcctgctaaagaagat
gataaaccaataaaaaacattggccgagcttcaggaaatgcttccactactgcttcagct
aaagtgactaactcatccactagatcttcagactttcattctgaaacaaaagtggaggtc
acaaattcaaaatcttctgattcaaagattcatggggggaaagatgatgggatggaatac
tctgatgtgaaacaatcatcttctaggtctacacattctcctaggcatgagaatcttatt
gcaacttctaagtctactgaaaaatctcaaaaaagaaccagtcctgctgaagaccttgac
cgactaaataaacgccgcaagagcgacgttgattcaagagagacggacagtggtgaggtt
cgattatctgaaagggagaggtcaaatgatttgcgagctacagataaaattcacatggca
gcatctgagaaatcaggctctgatgaacaggtcagtagcagggttacagatagggcagtg
gacaaatcaaaagaaaagagcagtgaaagatatgatagggatcatcgggaaagagtagaa
cgccctgacaagtcacgcggcgatgattttttatctgaaaaattaagagacaggtcactg
gaaaggcatggaagagagcgttcagttgaaagagtacaagaaaggggtgcggacaggaac
tttgatagactggccaaagatgataggaataaagatgacagaggcaaagtaaggtataat
gatgcatctgttgagaaatctcacggagatgaaaaatttcatgggcagaatttgcctcca
cctccacctctgccacctcatgtgatcccccaatctgttagtgccagtagcaggagagat
gatgatactgataggcgatttggaaatgccagacatacacaaaagctttcacctcggcat
gatgagagggaaaagagaagatctgaagagaatgcttcagtattacaggatgacacaaag
cggagacgagatgatgaatttcgagatagaaagcgcgatgagcgtgatgcagcatcaatc
aagatggatgagagggagagggagaaatcaaatgccaacaaggaagaagtcgatttaaat
gctactaagagacggaaactcaaaagggagcatatgacatcagaacctggagagtattta
ccatccgcaccctcacctgctcccgtgccagtaagtttaccgcagactcatgatgtaaga
gacagggttgaccgcaagggggcgatagtgcaacgcccaagttatgttgaggagcccggc
ttacgggtccacagcaaagaagcagccaacaaaacccgccgtgatgctgatccaatgtat
gacagagagtgggaagatgacaagagacagagagctgaaccaaagaggcggcatcgcaag
taa
DBGET
integrated database retrieval system
