Salvia splendens (scarlet sage): 121772066
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Entry
121772066 CDS
T07627
Name
(RefSeq) pre-mRNA splicing factor SR-like 1
KO
K12850
pre-mRNA-splicing factor 38B
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121772066
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sspl03041
]
121772066
Spliceosome [BR:
sspl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
121772066
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Paralog
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Motif
Pfam:
PRP38
Bee_toxin
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
121772066
NCBI-ProteinID:
XP_042024945
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Position
16:complement(23943593..23947327)
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AA seq
413 aa
AA seq
DB search
MSEIKSSGRPFDQLLEKVLCMNILSSDYFRDLLKLKTYHEVIDEIYVTVTHVEPWMTGNC
RGPSTAFCLLYKFFLMKLTVKQMHGLLNHPDSPYIRAIGFLYLRYVADPKTLWSWCEPYV
KDDEEFSPGCNGRMTTMGAYVRDLLLGQYYFDTLLPRIPVLVLRTVVANLESMNLPSKHC
GVTGETTRGSEETARRPPSVKAALSVSFGQRAPHRTITRDSSPVRRTANHYYDRGNESRR
SPQNGDLSDRDHPGRERDRGKDKDDNRDQDRTRDRRYRDRDDERRREPEKGKDRRHDYDR
RSRDTYRRSYDRRGREDYRREGGSHQSRSRSRSRCRSQSQSTNEYGKHNVSGHNPFSHES
KEKRSASSNLAELKDLYGVSSNQKEGVAEASEGRPYRPGGTEEVIRLGGSSWR
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagataaagtcatctgggagaccatttgatcaattattggagaaagtattatgc
atgaatatactttcttctgattattttcgtgacctgttgaaattgaaaacttatcatgag
gttattgatgagatttatgttactgtcacacacgtggagccatggatgactggaaactgc
cgagggccttctactgctttctgcctcctctacaaattctttcttatgaagctcactgtc
aagcaaatgcatggcttattgaatcacccagattctccttatattagagcaataggattt
ctctatctaaggtatgtagctgatccaaagactttatggagttggtgtgaaccgtatgta
aaagatgatgaggaattctctcctggttgtaatggccgtatgacaacaatgggtgcgtat
gtgagggatttgcttcttggacagtactattttgacacacttcttcctcgtattccggtg
ctggtgttgcgcactgttgtagccaatcttgaaagtatgaacctgccatctaaacactgt
ggagttactggtgagaccactcgtggcagtgaagagactgcaagaagaccaccttctgtt
aaggctgccctttctgtctctttcggtcaacgtgcccctcatcggacaataactagggat
tcatctccagttcggcgaacagctaatcattattatgatcgaggtaatgaatcaagacga
tctccccaaaatggtgatctatctgatcgggatcatcctggaagggagagagacaggggc
aaggacaaggacgacaaccgcgatcaagacagaaccagggatcggcggtatagagacagg
gatgatgaaaggagaagagagccggaaaaaggtaaggataggaggcatgattatgacagg
agatcccgagacacctatagaaggagttatgataggaggggccgtgaagactacaggaga
gaaggcggttctcatcagagcagaagtaggagtaggagcaggtgccggagtcaaagtcag
agcaccaatgaatatggcaagcataatgtaagtggtcacaatccatttagccatgaaagt
aaggagaagagatctgcatcaagtaatctggctgagctcaaagatctgtacggtgtgtcg
agcaatcaaaaggagggcgtggctgaggcctcggagggtcgcccttacaggcccggtggt
actgaggaggtgatcagacttggtggttcgtcatggaggtaa
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